net.maizegenetics.analysis.imputation

Class PhaseHighCoverage

net.maizegenetics.analysis.imputation.PhaseHighCoverage

public class PhaseHighCoverage

Constructor Detail

PhaseHighCoverage

public PhaseHighCoverage(GenotypeTable genotype)

Method Detail

loadPlotInfo

public java.util.List<kotlin.Array[]> loadPlotInfo()

phaseParentsUsingAllAvailableProgeny

public void phaseParentsUsingAllAvailableProgeny(double minEigenRatio,
                                                 java.nio.file.Path savepath)

phaseParentsUsingAllAvailableProgeny

public void phaseParentsUsingAllAvailableProgeny(double minEigenRatio)

phaseParentUsingSelfAndCrossProgeny

public kotlin.Array[] phaseParentUsingSelfAndCrossProgeny(java.lang.String parent,
                                                          GenotypeTable myGeno,
                                                          double minEigenRatio,
                                                          java.util.List<kotlin.Array[]> plotInfo)

phaseParentUsingOneProgeny

public kotlin.Array[] phaseParentUsingOneProgeny(java.lang.String parent,
                                                 java.lang.String otherParent,
                                                 java.lang.String progeny,
                                                 GenotypeTable gt)

setOuthapsAllProgeny

public void setOuthapsAllProgeny(java.lang.String filename)

setParentage

public void setParentage(java.lang.String filename)

setGenotypeTable

public void setGenotypeTable(GenotypeTable genotype)