net.maizegenetics.analysis.imputation

Class ViterbiAlgorithmVariableStateNumber

net.maizegenetics.analysis.imputation.ViterbiAlgorithmVariableStateNumber

public class ViterbiAlgorithmVariableStateNumber

Constructor Detail

ViterbiAlgorithmVariableStateNumber

public ViterbiAlgorithmVariableStateNumber(kotlin.Array[] observations,
                                           TransitionProbability transitionMatrix,
                                           EmissionProbability obsGivenTrue,
                                           kotlin.Array[] pTrue)

Method Detail

calculate

public void calculate()

initialize

public void initialize()

updateDistanceAndHistory

public void updateDistanceAndHistory(int node)

getMostProbableIntegerStateSequence

public kotlin.Array[] getMostProbableIntegerStateSequence()

Returns:

org.jetbrains.dokka.NodeRenderContent@47c5c163: an int array representing the sequence of most likely states given the data

getMostProbableStateSequence

public kotlin.Array[] getMostProbableStateSequence()

Returns:

org.jetbrains.dokka.NodeRenderContent@25e9216d: a byte array representing the sequence of most likely states given the data

setStateProbability

public void setStateProbability(kotlin.Array[] probTrueState)