net.maizegenetics.analysis.imputation

Class WritePopulationAlignmentPlugin

AbstractPlugin

net.maizegenetics.analysis.imputation.WritePopulationAlignmentPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class WritePopulationAlignmentPlugin
extends AbstractPlugin

Field Detail

brkptComment1

public static java.lang.String brkptComment1

See Also:

Constant Field Values

brkptComment2

public static java.lang.String brkptComment2

See Also:

Constant Field Values

brkptComment3

public static java.lang.String brkptComment3

See Also:

Constant Field Values

Constructor Detail

WritePopulationAlignmentPlugin

public WritePopulationAlignmentPlugin(java.awt.Frame parentFrame)

Method Detail

performFunction

public DataSet performFunction(DataSet input)

setParameters

public void setParameters(java.lang.String[] args)

setMergeAlignments

public void setMergeAlignments(boolean mergeAlignments)

setWriteParentCalls

public void setWriteParentCalls(boolean writeParentCalls)

setOutputDiploid

public void setOutputDiploid(boolean outputDiploid)

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()

getUsage

public java.lang.String getUsage()

setWriteNucleotides

public void setWriteNucleotides(boolean writeNucleotides)

setMinSnpCoverage

public void setMinSnpCoverage(double minSnpCoverage)

setMaxMafForMono

public void setMaxMafForMono(double maxMafForMono)

setBaseFile

public void setBaseFile(java.lang.String baseFile)

setBreakpointBaseName

public void setBreakpointBaseName(java.lang.String bkptBase)

setAlgorithmName

public void setAlgorithmName(java.lang.String algorithm)

setDeleteHetsInBreakpoints

public void setDeleteHetsInBreakpoints(boolean hetsToMissing)