net.maizegenetics.analysis.modelfitter

Class AddDomPermutationTestSpliterator

CovariatePermutationTestSpliterator

net.maizegenetics.analysis.modelfitter.AddDomPermutationTestSpliterator

public class AddDomPermutationTestSpliterator
extends CovariatePermutationTestSpliterator

This class calculates p-values for a test of a single SNP with a list of permuted data sets. myPermutedData is a list of double[] arrays, each of which is a data set to be tested. This class extends a parent class which tests an additive only model to test an additive + dominance model instead.

Constructor Detail

AddDomPermutationTestSpliterator

public AddDomPermutationTestSpliterator(java.util.List<kotlin.Array[]> permutedData,
                                        java.util.List<net.maizegenetics.analysis.modelfitter.AdditiveSite> siteList,
                                        java.util.List<net.maizegenetics.stats.linearmodels.ModelEffect> baseModel)

Method Detail

tryAdvance

public boolean tryAdvance(java.util.function.Consumer<? super double[]> action)