net.maizegenetics.analysis.modelfitter

Class RefProbAdditiveSite

AbstractAdditiveSite

net.maizegenetics.analysis.modelfitter.RefProbAdditiveSite

All Implemented Interfaces:

AdditiveSite

public class RefProbAdditiveSite
extends AbstractAdditiveSite

An AdditiveSite that takes a float[] valued covariate as an argument. The covariate should equal the probability that a given allele (major or minor, for example) would be selected at random from that site. It also stores the value of a statistic determined by selectionCriteria which results from fitting a linear model.

Constructor Detail

RefProbAdditiveSite

public RefProbAdditiveSite(int site,
                           java.lang.String chr,
                           int pos,
                           java.lang.String id,
                           net.maizegenetics.analysis.modelfitter.AdditiveSite.CRITERION selectionCriteria,
                           kotlin.Array[] covariate)

Method Detail

getCovariate

public kotlin.Array[] getCovariate()

getCovariate

public kotlin.Array[] getCovariate(kotlin.Array[] subset)

reindexTaxa

public void reindexTaxa(kotlin.Array[] taxaIndex,
                        java.util.List<java.lang.Integer> uniqueTaxa)

copy

public AdditiveSite copy()