net.maizegenetics.analysis.numericaltransform

Class TransformDataPlugin

AbstractPlugin

net.maizegenetics.analysis.numericaltransform.TransformDataPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class TransformDataPlugin
extends AbstractPlugin

Constructor Detail

TransformDataPlugin

public TransformDataPlugin(java.awt.Frame parentFrame,
                           boolean isInteractive)

Method Detail

processData

public DataSet processData(DataSet input)

transformTraits

public DataSet transformTraits(Phenotype myPhenotype,
                               Datum myData)

transformAttribute

public PhenotypeAttribute transformAttribute(PhenotypeAttribute myAttribute)

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()

powerTransform

public NumericAttribute powerTransform(NumericAttribute original)

logTransform

public NumericAttribute logTransform(NumericAttribute original)

standardize

public NumericAttribute standardize(NumericAttribute original)

meanStdDev

public kotlin.Array[] meanStdDev(kotlin.Array[] data)

standardize

public NumericAttribute standardize(NumericAttribute original,
                                    java.util.List<net.maizegenetics.phenotype.CategoricalAttribute> byFactors)

subsets

public java.util.List<kotlin.Array[]> subsets(java.util.List<net.maizegenetics.phenotype.CategoricalAttribute> byFactors)

setParameters

public void setParameters(java.lang.String[] args)

getUsage

public java.lang.String getUsage()

setTraits

public void setTraits(java.lang.String namelist)

setFactors

public void setFactors(java.lang.String namelist)

setTraitsToTransform

public void setTraitsToTransform(java.util.List<net.maizegenetics.phenotype.NumericAttribute> traitsToTransform)

setByFactor

public void setByFactor(java.util.List<net.maizegenetics.phenotype.CategoricalAttribute> byFactor)

setLogTransform

public void setLogTransform(boolean logTransform)

setPowerTransform

public void setPowerTransform(boolean powerTransform)

setStandardize

public void setStandardize(boolean standardize)

setMyBase

public void setMyBase(net.maizegenetics.analysis.numericaltransform.TransformDataPlugin.BASE myBase)

setPower

public void setPower(double power)