net.maizegenetics.analysis.popgen

Class SequenceDiversityPlugin

AbstractPlugin

net.maizegenetics.analysis.popgen.SequenceDiversityPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class SequenceDiversityPlugin
extends AbstractPlugin

Constructor Detail

SequenceDiversityPlugin

public SequenceDiversityPlugin(java.awt.Frame parentFrame,
                               boolean isInteractive)

Method Detail

preProcessParameters

protected void preProcessParameters(DataSet input)

postProcessParameters

protected void postProcessParameters()

processData

public DataSet processData(DataSet input)

startSite

public java.lang.Integer startSite()

Start Site

Returns:

org.jetbrains.dokka.NodeRenderContent@554aec8f: Start Site

startSite

public SequenceDiversityPlugin startSite(java.lang.Integer value)

Set Start Site. Start Site

Parameters:

value - Start Site

Returns:

org.jetbrains.dokka.NodeRenderContent@30b85f2a: this plugin

endSite

public java.lang.Integer endSite()

End Site

Returns:

org.jetbrains.dokka.NodeRenderContent@4f2a8008: End Site

endSite

public SequenceDiversityPlugin endSite(java.lang.Integer value)

Set End Site. End Site

Parameters:

value - End Site

Returns:

org.jetbrains.dokka.NodeRenderContent@15d100be: this plugin

isSlidingWindowAnalysis

public java.lang.Boolean isSlidingWindowAnalysis()

Whether this is sliding window analysis

Returns:

org.jetbrains.dokka.NodeRenderContent@177db81f: Sliding Window Analysis

isSlidingWindowAnalysis

public SequenceDiversityPlugin isSlidingWindowAnalysis(java.lang.Boolean value)

Set Sliding Window Analysis. Whether this is sliding window analysis

Parameters:

value - Sliding Window Analysis

Returns:

org.jetbrains.dokka.NodeRenderContent@65cee4d5: this plugin

windowSize

public java.lang.Integer windowSize()

Window Size

Returns:

org.jetbrains.dokka.NodeRenderContent@7eff02a4: Window Size

windowSize

public SequenceDiversityPlugin windowSize(java.lang.Integer value)

Set Window Size. Window Size

Parameters:

value - Window Size

Returns:

org.jetbrains.dokka.NodeRenderContent@63b62935: this plugin

stepSize

public java.lang.Integer stepSize()

Step Size

Returns:

org.jetbrains.dokka.NodeRenderContent@1971c81c: Step Size

stepSize

public SequenceDiversityPlugin stepSize(java.lang.Integer value)

Set Step Size. Step Size

Parameters:

value - Step Size

Returns:

org.jetbrains.dokka.NodeRenderContent@b8b7fab: this plugin

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()