public class PositionListIOUtils
Utilities for reading and writing Position Lists
public static PositionList readSNPConserveFile(java.lang.String fileName)
Returns a PositionList from a tab-delimited text SNP Conserve file. The input file has 2 tab-delimited fields indicating Chromosome Number and Position A header row is the first line and looks like this: #CHROM POS The remaining rows contains integer values as below: 9 18234
fileName - with complete pathpublic static PositionList readQualityScoreFile(java.lang.String fileName)
Returns a PositionList from a tab-delimited text SNP Quality Score file. The input file has 3 tab-delimited fields indicating Chromosome Number and Quality Score Position A header row is the first line and looks like this: CHROM POS QUALITYSCORE The remaining rows contains integer values as below: 9 18234 15.5 NOTE: the CHROM field is a string.
fileName - with complete path