net.maizegenetics.dna.map

Interfaces

• GVCFGenomeSequence
• GenomeSequence
• Position
• PositionList
• TOPMInterface

Classes

• AbstractPETagsOnPhysicalMap
• AbstractTagsOnPhysicalMap
• Chromosome
• DonorHaplotypes
• GVCFGenomeSequenceBuilder
• GeneralPosition
• GenomeFeature
• GenomeFeatureBuilder
• GenomeFeatureMap
• GenomeFeatureMapBuilder
• GenomeSequenceBuilder
• PETagsOnPhysicalMap
• PETagsOnPhysicalMapV3
• PositionListBuilder
• PositionListIOUtils
• PositionListTableReport
• TOPMTableReport
• TOPMUtils
• TagGWASMap
• TagGWASMapInfo
• TagGeneticMappingInfo
• TagLocus
• TagMappingInfo
• TagMappingInfoV3
• TagsOnGeneticMap
• TagsOnPhysMapHDF5
• TagsOnPhysicalMap
• TagsOnPhysicalMapV3
• UpdateTOPMWithGeneticMapping