net.maizegenetics.dna.pd

Class SiteAnnotation

net.maizegenetics.dna.pd.SiteAnnotation

public class SiteAnnotation

User: dkroon Date: 6/26/13 Time: 2:07 PM

Field Detail

annotations

public java.util.TreeMap<java.lang.String,java.lang.Double> annotations

Constructor Detail

SiteAnnotation

public SiteAnnotation(int aSite,
                      int aChromosome,
                      int aPosition)

Method Detail

setGwasResults

public void setGwasResults(java.util.TreeMap<java.lang.String,java.lang.Double> gwasResultsIn)

setAnnotations

public void setAnnotations(java.util.TreeMap<java.lang.String,java.lang.Double> annotationsIn)

getGWASTraits

public java.util.List<java.lang.String> getGWASTraits()

Obtain complete listing of all available traits for which GWAS traits may be available

Returns:

org.jetbrains.dokka.NodeRenderContent@5adfb430:

getGWASResult

public java.lang.Double getGWASResult(java.lang.String trait)

Obtain GWAS result value for given trait

Parameters:

trait -

Returns:

org.jetbrains.dokka.NodeRenderContent@6cf51860:

getAnnotationTypes

public java.util.List<java.lang.String> getAnnotationTypes()

Obtain complete listing of all annotations types available. Examples: Minor Allele Frequency

Returns:

org.jetbrains.dokka.NodeRenderContent@286729ba:

getAnnotationValue

public java.lang.Double getAnnotationValue(java.lang.String annotationType)

Parameters:

annotationType -

Returns:

org.jetbrains.dokka.NodeRenderContent@3c3fa007: