public class PERead
Holding paired end read. Providing merging function
public boolean merge(boolean ifPrintAlignment)
public Read getForwardRead()
Return forward read
public Read getBackwardRead()
Return backward read
public Read getPContig()
Return Pcontig read Return null when there is no Pcontig
public int getOverlapLength()
Return length of overlap of PE
public float getOverlapIdentity()
Return identity of overlap of PE