net.maizegenetics.dna.snp.genotypecall

Class GOBIIGenotypeCallTable

net.maizegenetics.dna.snp.genotypecall.GOBIIGenotypeCallTable

public class GOBIIGenotypeCallTable

Method Detail

getInstance

public static GOBIIGenotypeCallTable getInstance(int numTaxa,
                                                 int numSites,
                                                 boolean phased,
                                                 java.lang.String filename)

genotype

public byte genotype(int taxon,
                     int site)

genotypeForAllTaxa

public kotlin.Array[] genotypeForAllTaxa(int site)

genotypeAsString

public java.lang.String genotypeAsString(int taxon,
                                         int site)

diploidAsString

public java.lang.String diploidAsString(int site,
                                        byte value)

transposeData

public void transposeData(boolean siteInnerLoop)

isSiteOptimized

public boolean isSiteOptimized()

main

public static void main(java.lang.String[] args)