net.maizegenetics.dna.snp.io

Class BuilderFromPLINK

net.maizegenetics.dna.snp.io.BuilderFromPLINK

public class BuilderFromPLINK

Method Detail

getBuilder

public static BuilderFromPLINK getBuilder(java.lang.String pedfile,
                                          java.lang.String mapfile,
                                          ProgressListener listener)

build

public GenotypeTable build()

sortTaxa

public BuilderFromPLINK sortTaxa()

Set the builder so that when built it will sort the taxa

sortPositions

public BuilderFromPLINK sortPositions()

Set the builder so that when built it will sort the positions.

getPLINKAlleleByte

public static byte getPLINKAlleleByte(char value)

Returns haploid byte value for given PLINK value. Only right-most four bits used.

Parameters:

value - haploid allele value

Returns:

org.jetbrains.dokka.NodeRenderContent@5721ab58: nucleotide haploid allele byte value