net.maizegenetics.dna.snp.io

Class LineIndexBuilder

net.maizegenetics.dna.snp.io.LineIndexBuilder

public class LineIndexBuilder

Field Detail

LINE_INDEX_FILE_EXTENSION

public static java.lang.String LINE_INDEX_FILE_EXTENSION

See Also:

Constant Field Values

MAGIC_NUMBER

public static int MAGIC_NUMBER

Constructor Detail

LineIndexBuilder

public LineIndexBuilder(java.lang.String fileToIndex)

Method Detail

commentChar

public LineIndexBuilder commentChar(char commentChar)

numHeaderLinesToSkip

public LineIndexBuilder numHeaderLinesToSkip(int numLines)

numColumnsPerRowToKeepInIndex

public LineIndexBuilder numColumnsPerRowToKeepInIndex(int numColumns)

readIndex

public static Tuple<net.maizegenetics.dna.snp.io.LineIndex,kotlin.Array[]> readIndex(java.lang.String idxFilename)

build

public void build()

buildHapmapIndex

public static void buildHapmapIndex(java.lang.String filename)