net.maizegenetics.dna.snp.score

Class MaskAlleleDepth

AlleleDepth

net.maizegenetics.dna.snp.score.MaskAlleleDepth

All Implemented Interfaces:

SiteScore

public class MaskAlleleDepth
extends AlleleDepth

Constructor Detail

MaskAlleleDepth

public MaskAlleleDepth(AlleleDepth depth,
                       MaskMatrix mask)

Method Detail

value

public int value(int taxon,
                 int site,
                 net.maizegenetics.dna.snp.score.SiteScore.SITE_SCORE_TYPE scoreType)

valueByte

public byte valueByte(int taxon,
                      int site,
                      net.maizegenetics.dna.snp.score.SiteScore.SITE_SCORE_TYPE scoreType)

base

public AlleleDepth base()

mask

public MaskMatrix mask()