net.maizegenetics.dna.tag

Class GBSHDF5Constants

net.maizegenetics.dna.tag.GBSHDF5Constants

public class GBSHDF5Constants

Path definitions for the HDF5 GBS file formats.

Field Detail

ROOT

public static java.lang.String ROOT

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Constant Field Values

TAGS

public static java.lang.String TAGS

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Constant Field Values

TAGLENGTH

public static java.lang.String TAGLENGTH

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Constant Field Values

MULTIMAPS

public static java.lang.String MULTIMAPS

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Constant Field Values

BEST_STRAND

public static java.lang.String BEST_STRAND

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Constant Field Values

BEST_CHR

public static java.lang.String BEST_CHR

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Constant Field Values

BEST_STARTPOS

public static java.lang.String BEST_STARTPOS

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BEST_ENDPOS

public static java.lang.String BEST_ENDPOS

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Constant Field Values

BEST_DIVERGENCE

public static java.lang.String BEST_DIVERGENCE

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Constant Field Values

BEST_MAPP

public static java.lang.String BEST_MAPP

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Constant Field Values

BEST_DCOP

public static java.lang.String BEST_DCOP

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Constant Field Values

BEST_EVIDENCE

public static java.lang.String BEST_EVIDENCE

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BEST_MAPINDEX

public static java.lang.String BEST_MAPINDEX

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Constant Field Values

GENETICMAMMPING

public static java.lang.String GENETICMAMMPING

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Constant Field Values

GENETICMAMMPINGGW

public static java.lang.String GENETICMAMMPINGGW

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Constant Field Values

MAPBASE

public static java.lang.String MAPBASE

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Constant Field Values

VARIANTDEF

public static java.lang.String VARIANTDEF

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Constant Field Values

VARIANTPOSOFF

public static java.lang.String VARIANTPOSOFF

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Constant Field Values

TAGCOUNT

public static java.lang.String TAGCOUNT

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Constant Field Values

MAXVARIANTS

public static java.lang.String MAXVARIANTS

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Constant Field Values

MAXMAPPING

public static java.lang.String MAXMAPPING

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Constant Field Values

TAGLENGTHINLONG

public static java.lang.String TAGLENGTHINLONG

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Constant Field Values