net.maizegenetics.dna.tag

Class TagBuilder

net.maizegenetics.dna.tag.TagBuilder

public class TagBuilder

Builder for tags that optimizes the memory footprint. Tags are encoded in long with 2 bits per bp. In GBS, we generally use only record the 64 or 96bp. Custom classes are generated with 32, 64 or 96bp tags (1, 2 or 3 longs) otherwise an array is used.

Method Detail

reference

public TagBuilder reference()

name

public TagBuilder name(java.lang.String name)

build

public Tag build()

instance

public static TagBuilder instance(kotlin.Array[] seq2Bit,
                                  short length)

instance

public static TagBuilder instance(kotlin.Array[] seq2BitInBytes,
                                  short length)

instance

public static TagBuilder instance(java.lang.String sequence)

reverseComplement

public static TagBuilder reverseComplement(Tag tag)