net.maizegenetics.gui

Class AlignmentTableCellRenderer

net.maizegenetics.gui.AlignmentTableCellRenderer

Direct Known Subclasses:

TOPMGenotypeTableCellRenderer

public class AlignmentTableCellRenderer

Field Detail

myAlignmentTableModel

protected AlignmentTableModel myAlignmentTableModel

Constructor Detail

AlignmentTableCellRenderer

public AlignmentTableCellRenderer(AlignmentTableModel model,
                                  GenotypeTable alignment,
                                  GenotypeTableMask[] masks)

Method Detail

getTableCellRendererComponent

public java.awt.Component getTableCellRendererComponent(javax.swing.JTable table,
                                                        java.lang.Object value,
                                                        boolean isSelected,
                                                        boolean hasFocus,
                                                        int row,
                                                        int col)

getDefaultRendering

protected java.awt.Component getDefaultRendering(javax.swing.JTable table,
                                                 java.lang.Object value,
                                                 boolean isSelected,
                                                 boolean hasFocus,
                                                 int row,
                                                 int col)

getNucleotideRendering

protected java.awt.Component getNucleotideRendering(javax.swing.JTable table,
                                                    java.lang.Object value,
                                                    boolean isSelected,
                                                    boolean hasFocus,
                                                    int row,
                                                    int col)

getReferenceMasksRendering

public java.awt.Component getReferenceMasksRendering(javax.swing.JTable table,
                                                     java.lang.Object value,
                                                     boolean isSelected,
                                                     boolean hasFocus,
                                                     int row,
                                                     int col)

getReferenceProbabilityRendering

public java.awt.Component getReferenceProbabilityRendering(javax.swing.JTable table,
                                                           java.lang.Object value,
                                                           boolean isSelected,
                                                           boolean hasFocus,
                                                           int row,
                                                           int col)

getGeneticDistanceMasksRendering

public java.awt.Component getGeneticDistanceMasksRendering(javax.swing.JTable table,
                                                           java.lang.Object value,
                                                           boolean isSelected,
                                                           boolean hasFocus,
                                                           int row,
                                                           int col)

getDepthMasksRendering

public java.awt.Component getDepthMasksRendering(javax.swing.JTable table,
                                                 java.lang.Object value,
                                                 boolean isSelected,
                                                 boolean hasFocus,
                                                 int row,
                                                 int col)

getRenderingType

public net.maizegenetics.gui.AlignmentTableCellRenderer.RENDERING_TYPE getRenderingType()

setRenderingType

public void setRenderingType(net.maizegenetics.gui.AlignmentTableCellRenderer.RENDERING_TYPE type)

setMasks

public void setMasks(GenotypeTableMask[] masks)

getRenderingTypes

public net.maizegenetics.gui.AlignmentTableCellRenderer.RENDERING_TYPE[] getRenderingTypes()