net.maizegenetics.phenotype

Class FilterPhenotype

net.maizegenetics.phenotype.FilterPhenotype

All Implemented Interfaces:

Phenotype, TableReport

public class FilterPhenotype
implements Phenotype

Method Detail

getTableColumnNames

public java.lang.Object[] getTableColumnNames()

getTableTitle

public java.lang.String getTableTitle()

getColumnCount

public int getColumnCount()

getRowCount

public long getRowCount()

getElementCount

public long getElementCount()

getRow

public java.lang.Object[] getRow(long row)

getValueAt

public java.lang.Object getValueAt(long row,
                                   int col)

value

public java.lang.Object value(int obs,
                              int attrnum)

isMissing

public boolean isMissing(int obs,
                         int attrnum)

attribute

public PhenotypeAttribute attribute(int attrnum)

indexOfAttribute

public int indexOfAttribute(PhenotypeAttribute attribute)

attributeListCopy

public java.util.List<net.maizegenetics.phenotype.PhenotypeAttribute> attributeListCopy()

attributeListOfType

public java.util.List<net.maizegenetics.phenotype.PhenotypeAttribute> attributeListOfType(net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE type)

attributeStream

public java.util.stream.Stream<net.maizegenetics.phenotype.PhenotypeAttribute> attributeStream()

dataAttributeStream

public java.util.stream.Stream<net.maizegenetics.phenotype.NumericAttribute> dataAttributeStream()

covariateAttributeStream

public java.util.stream.Stream<net.maizegenetics.phenotype.NumericAttribute> covariateAttributeStream()

factorAttributeStream

public java.util.stream.Stream<net.maizegenetics.phenotype.CategoricalAttribute> factorAttributeStream()

typeListCopy

public java.util.List<net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE> typeListCopy()

numberOfAttributes

public int numberOfAttributes()

numberOfObservations

public int numberOfObservations()

taxa

public TaxaList taxa()

numberOfAttributesOfType

public int numberOfAttributesOfType(net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE type)

attributeIndicesOfType

public kotlin.Array[] attributeIndicesOfType(net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE type)

attributeType

public net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE attributeType(int attrnum)

attributeName

public java.lang.String attributeName(int attrnum)

name

public java.lang.String name()

hasTaxaAttribute

public boolean hasTaxaAttribute()

taxaAttribute

public TaxaAttribute taxaAttribute()

attributeIndexForName

public int attributeIndexForName(java.lang.String name)

areTaxaReplicated

public boolean areTaxaReplicated()

asCorePhenotype

public Phenotype asCorePhenotype()