net.maizegenetics.phenotype

Class PhenotypeUtils

net.maizegenetics.phenotype.PhenotypeUtils

public class PhenotypeUtils

Method Detail

write

public static void write(Phenotype phenotype,
                         java.lang.String filename)

writePlink

public static void writePlink(Phenotype phenotype,
                              java.lang.String filename)

createPhenotypeObjectFromDB

public static Phenotype createPhenotypeObjectFromDB(java.util.ArrayList<java.util.ArrayList> phenos)

createPhenotypeObjectFromDB2

public static Phenotype createPhenotypeObjectFromDB2(java.util.ArrayList<java.util.ArrayList> phenos)

createPhenotypeFromTransform

public static Phenotype createPhenotypeFromTransform(java.util.ArrayList<java.lang.String> taxaListNames,
                                                     java.util.ArrayList<java.lang.String> variableNames,
                                                     java.util.List<java.util.ArrayList> data,
                                                     java.lang.String outputObjectName,
                                                     java.util.ArrayList<net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE> types)