net.maizegenetics.pipeline

Class TasselPipeline

net.maizegenetics.pipeline.TasselPipeline

All Implemented Interfaces:

PluginListener

public class TasselPipeline
implements PluginListener

Constructor Detail

TasselPipeline

public TasselPipeline(java.lang.String[] args,
                      TASSELMainFrame frame)

Creates a new instance of TasselPipeline

TasselPipeline

public TasselPipeline(java.lang.String[] args,
                      TASSELMainFrame frame,
                      boolean interactive,
                      java.lang.String name)

Creates a new instance of TasselPipeline

Method Detail

main

public static void main(java.lang.String[] args)

parseArgs

public void parseArgs(java.lang.String[] input)

addForkFlagsIfNeeded

public static java.lang.String[] addForkFlagsIfNeeded(java.lang.String[] args)

loadFile

public FileLoadPlugin loadFile(java.lang.String filename,
                               net.maizegenetics.analysis.data.FileLoadPlugin.TasselFileType fileType)

getTableDisplayPlugin

public TableDisplayPlugin getTableDisplayPlugin(java.lang.String filename,
                                                java.lang.String flag)

getLinkageDiseqDisplayPlugin

public LinkageDiseqDisplayPlugin getLinkageDiseqDisplayPlugin(java.lang.String type)

dataSetReturned

public void dataSetReturned(PluginEvent event)

Returns Tassel data set after complete.

Parameters:

event - event

progress

public void progress(PluginEvent event)

Returns progress of execution.

Parameters:

event - event