net.maizegenetics.stats.linearmodels

Class SweepFastLinearModel

net.maizegenetics.stats.linearmodels.SweepFastLinearModel

public class SweepFastLinearModel

Constructor Detail

SweepFastLinearModel

public SweepFastLinearModel(java.util.ArrayList<net.maizegenetics.stats.linearmodels.ModelEffect> effects,
                            kotlin.Array[] data)

SweepFastLinearModel

public SweepFastLinearModel(java.util.List<net.maizegenetics.stats.linearmodels.ModelEffect> effects,
                            kotlin.Array[] data)

SweepFastLinearModel

public SweepFastLinearModel(java.util.ArrayList<net.maizegenetics.stats.linearmodels.ModelEffect> effects,
                            DoubleMatrix[] xtx,
                            DoubleMatrix[] xty,
                            kotlin.Array[] data)

Method Detail

getMarginalSSdf

public kotlin.Array[] getMarginalSSdf(int effect)

getIncrementalSSdf

public kotlin.Array[] getIncrementalSSdf(int effect)

getResidualSSdf

public kotlin.Array[] getResidualSSdf()

getFullModelSSdf

public kotlin.Array[] getFullModelSSdf()

getModelcfmSSdf

public kotlin.Array[] getModelcfmSSdf()

getBeta

public kotlin.Array[] getBeta()

getBlues

public kotlin.Array[] getBlues(int effect,
                               boolean restricted)

getInverseOfXtX

public DoubleMatrix getInverseOfXtX()

getPredictedValues

public DoubleMatrix getPredictedValues()

getResiduals

public DoubleMatrix getResiduals()