net.maizegenetics.taxa.tree

Class NeighborJoiningTree

SimpleTree

net.maizegenetics.taxa.tree.NeighborJoiningTree

All Implemented Interfaces:

Tree, Units, UnitsProvider

public class NeighborJoiningTree
extends SimpleTree

constructs a neighbor-joining tree from pairwise distances

Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol, 4(4):406-425,

Constructor Detail

NeighborJoiningTree

public NeighborJoiningTree(DistanceMatrix m)

construct NJ tree

Parameters:

m - distance matrix