net.maizegenetics.taxa.tree

Class Parameterized.ParameterizedBase

net.maizegenetics.taxa.tree.Parameterized.ParameterizedBase

Enclosing interface:

Parameterized

public static class Parameterized.ParameterizedBase

A Utility class for using as the superclass to subclasses which are based on double arrays

Constructor Detail

ParameterizedBase

protected ParameterizedBase(kotlin.Array[] parameters,
                            kotlin.Array[] lowerLimits,
                            kotlin.Array[] upperLimits,
                            kotlin.Array[] defaultValues)

Builds a parameterized objects around a set of double arrays

ParameterizedBase

protected ParameterizedBase(kotlin.Array[] parameters,
                            kotlin.Array[] lowerLimits,
                            kotlin.Array[] upperLimits,
                            kotlin.Array[] defaultValues,
                            kotlin.Array[] parametersSE)

Builds a parameterized objects around a set of double arrays

ParameterizedBase

protected ParameterizedBase()

Builds a parameterized objects around a set of double arrays. The user needs to call setSource() at some point to correctly set things up

Method Detail

setSource

protected void setSource(kotlin.Array[] parameters,
                         kotlin.Array[] lowerLimits,
                         kotlin.Array[] upperLimits,
                         kotlin.Array[] defaultValues)

Set's the base arrays...

Throws:

IllegalArgumentException - if arrays are not the same size

setSource

protected void setSource(kotlin.Array[] parameters,
                         kotlin.Array[] lowerLimits,
                         kotlin.Array[] upperLimits,
                         kotlin.Array[] defaultValues,
                         kotlin.Array[] parametersSE)

Set's the base arrays...

Throws:

IllegalArgumentException - if arrays are not the same size

getNumParameters

public int getNumParameters()

setParameter

public void setParameter(double param,
                         int n)

getParameter

public double getParameter(int n)

setParameterSE

public void setParameterSE(double paramSE,
                           int n)

getLowerLimit

public double getLowerLimit(int n)

getUpperLimit

public double getUpperLimit(int n)

getDefaultValue

public double getDefaultValue(int n)

getParametersSE

protected kotlin.Array[] getParametersSE()