net.maizegenetics.util

Interface SuperByteMatrix

All Known Implementing Classes:

SuperByteMatrixMultiple, SuperByteMatrixSingle, SuperByteMatrixSingleValue, SuperByteMatrixTranspose

public SuperByteMatrix

Method Detail

getNumRows

int getNumRows()

Return number of rows.

Returns:

org.jetbrains.dokka.NodeRenderContent@456cae17: number of rows

getNumColumns

int getNumColumns()

Return number of columns.

Returns:

org.jetbrains.dokka.NodeRenderContent@5da4803: number of columns

set

void set(int row,
         int column,
         byte value)

Sets value at given row and column.

Parameters:

row - row

column - column

value - value

arraycopy

void arraycopy(int row,
               kotlin.Array[] src,
               int startColumn)

Sets values at given row and starting column.

Parameters:

row - row

src - values

startColumn - start column

setAll

void setAll(byte value)

Sets value for all elements.

Parameters:

value - value

get

byte get(int row,
         int column)

Gets value at given row and column.

Parameters:

row - row

column - column

Returns:

org.jetbrains.dokka.NodeRenderContent@48977e1f: value

getAllColumns

kotlin.Array[] getAllColumns(int row)

Get all values for given row.

Parameters:

row - row

Returns:

org.jetbrains.dokka.NodeRenderContent@30cc9873: values

getColumnRange

kotlin.Array[] getColumnRange(int row,
                              int start,
                              int end)

Get values for given row from start column (inclusive) to end column (exclusive).

Parameters:

row - row

start - start

end - end

Returns:

org.jetbrains.dokka.NodeRenderContent@10f0846b: values

getAllRows

kotlin.Array[] getAllRows(int column)

Get all values for give column.

Parameters:

column - column

Returns:

org.jetbrains.dokka.NodeRenderContent@47bd5c26: values

isColumnInnerLoop

boolean isColumnInnerLoop()

Returns true if the matrix stored for better performance when column loop inside row loop. False if matrix stored for better performance when row loop inside column loop.

Returns:

org.jetbrains.dokka.NodeRenderContent@3429b548: true if the matrix stored for better performance when column loop inside row loop. False if matrix stored for better performance when row loop inside column loop.

reorderRows

void reorderRows(kotlin.Array[] newIndices)

Reorders rows of this matrix based on the given indices.

Parameters:

newIndices - new indices.

reorderColumns

void reorderColumns(kotlin.Array[] newIndices)

Reorders columns of this matrix based on the given indices.

Parameters:

newIndices - new indices.

setHetsTo

void setHetsTo(byte value)

Changes all heterozygous values to give value.

Parameters:

value - value

stream

java.util.stream.Stream<java.lang.Byte> stream()

Returns a Stream over the bytes of this matrix.

Returns:

org.jetbrains.dokka.NodeRenderContent@60f2acbe: Stream over the bytes of this matrix

stream

java.util.stream.Stream<java.lang.Byte> stream(int row)