net.maizegenetics.analysis.association

Class AssociationUtils

net.maizegenetics.analysis.association.AssociationUtils

public class AssociationUtils

Method Detail

createFixedEffectsArray

public static DoubleMatrix createFixedEffectsArray(java.util.List<net.maizegenetics.phenotype.PhenotypeAttribute> factorList,
                                                   java.util.List<net.maizegenetics.phenotype.PhenotypeAttribute> covariateList,
                                                   BitSet missing,
                                                   int numberOfObservations)

getNonMissingDoubles

public static kotlin.Array[] getNonMissingDoubles(kotlin.Array[] allData,
                                                  BitSet missing)

getNonMissingDoubles

public static kotlin.Array[] getNonMissingDoubles(kotlin.Array[] allData,
                                                  BitSet missing)

getNonMissingBytes

public static kotlin.Array[] getNonMissingBytes(kotlin.Array[] allData,
                                                BitSet missing)

getNonMissingValues

public static <T> T[] getNonMissingValues(T[] allData,
                                          BitSet missing)

getNonMissingValues

public static DoubleMatrix getNonMissingValues(DoubleMatrix allData,
                                               BitSet missing)

isMonomorphic

public static boolean isMonomorphic(kotlin.Array[] probs)

convertFloatArrayToDouble

public static kotlin.Array[] convertFloatArrayToDouble(kotlin.Array[] floatArray)

convertDoubleArrayToFloat

public static kotlin.Array[] convertDoubleArrayToFloat(kotlin.Array[] doubleArray)