net.maizegenetics.analysis.data

Class CountAssociationsPlugin

AbstractPlugin

net.maizegenetics.analysis.data.CountAssociationsPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class CountAssociationsPlugin
extends AbstractPlugin

Constructor Detail

CountAssociationsPlugin

public CountAssociationsPlugin(@Nullable
                               java.awt.Frame parentFrame,
                               boolean isInteractive)

CountAssociationsPlugin

public CountAssociationsPlugin()

Method Detail

processData

@Nullable
public DataSet processData(@Nullable
                                     DataSet input)

loadInIntervalFile

@NotNull
public com.google.common.collect.RangeMap<net.maizegenetics.dna.map.Position,java.lang.String> loadInIntervalFile(@NotNull
                                                                                                                           java.lang.String intervalFile)

getIcon

@Nullable
public javax.swing.ImageIcon getIcon()

getButtonName

@NotNull
public java.lang.String getButtonName()

getToolTipText

@NotNull
public java.lang.String getToolTipText()

intervalFile

@NotNull
public java.lang.String intervalFile()

Interval File.

Returns:

Intervals

intervalFile

@NotNull
public CountAssociationsPlugin intervalFile(@NotNull
                                                     java.lang.String value)

Set Intervals. Interval File.

Parameters:

value - Intervals

Returns:

this plugin

gwasResults

@NotNull
public java.lang.String gwasResults()

GWAS Result File.

Returns:

Gwas Results

gwasResults

@NotNull
public CountAssociationsPlugin gwasResults(@NotNull
                                                    java.lang.String value)

Set Gwas Results. GWAS Result File.

Parameters:

value - Gwas Results

Returns:

this plugin

outputFile

@NotNull
public java.lang.String outputFile()

Output Count File.

Returns:

Output Count File

outputFile

@NotNull
public CountAssociationsPlugin outputFile(@NotNull
                                                   java.lang.String value)

Set Output Count File. Output Count File.

Parameters:

value - Output Count File

Returns:

this plugin