net.maizegenetics.analysis.data

Class GenotypeSummaryPlugin

AbstractPlugin

net.maizegenetics.analysis.data.GenotypeSummaryPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class GenotypeSummaryPlugin
extends AbstractPlugin

Constructor Detail

GenotypeSummaryPlugin

public GenotypeSummaryPlugin()

GenotypeSummaryPlugin

public GenotypeSummaryPlugin(java.awt.Frame parentFrame,
                             boolean isInteractive)

Method Detail

preProcessParameters

protected void preProcessParameters(DataSet input)

processData

public DataSet processData(DataSet input)

printSimpleSummary

public static void printSimpleSummary(DataSet input)

printSimpleSummary

public static void printSimpleSummary(Datum current)

printSimpleSummary

public static void printSimpleSummary(GenotypeTable alignment,
                                      java.lang.String name)

runPlugin

public TableReport[] runPlugin(GenotypeTable genotype)

Convenience method to run plugin with one return object.

overview

public java.lang.Boolean overview()

Get Overview Report

Returns:

org.jetbrains.dokka.NodeRenderContent@52e0c51: Overview

overview

public GenotypeSummaryPlugin overview(java.lang.Boolean value)

Set Overview. Get Overview Report

Parameters:

value - Overview

Returns:

org.jetbrains.dokka.NodeRenderContent@2e604679: this plugin

siteSummary

public java.lang.Boolean siteSummary()

Get Site Summary

Returns:

org.jetbrains.dokka.NodeRenderContent@17354f9e: Site Summary

siteSummary

public GenotypeSummaryPlugin siteSummary(java.lang.Boolean value)

Set Site Summary. Get Site Summary

Parameters:

value - Site Summary

Returns:

org.jetbrains.dokka.NodeRenderContent@7bc14505: this plugin

taxaSummary

public java.lang.Boolean taxaSummary()

Get Taxa Summary

Returns:

org.jetbrains.dokka.NodeRenderContent@e7882a8: Taxa Summary

taxaSummary

public GenotypeSummaryPlugin taxaSummary(java.lang.Boolean value)

Set Taxa Summary. Get Taxa Summary

Parameters:

value - Taxa Summary

Returns:

org.jetbrains.dokka.NodeRenderContent@22874e90: this plugin

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()

pluginUserManualURL

public java.lang.String pluginUserManualURL()