net.maizegenetics.analysis.distance

Class DominanceNormalizedIBSMatrix

net.maizegenetics.analysis.distance.DominanceNormalizedIBSMatrix

public class DominanceNormalizedIBSMatrix

Method Detail

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype)

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375616/pdf/main.pdf p. 378

Parameters:

genotype - Genotype Table used to compute matrix

Returns:

org.jetbrains.dokka.NodeRenderContent@12d6b735: Dominance Normalized IBS Matrix

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype,
                                         ProgressListener listener)

Same as other getInstance() but reports progress.

Parameters:

genotype - Genotype Table used to compute matrix

listener - Progress listener

Returns:

org.jetbrains.dokka.NodeRenderContent@25223c3a: Dominance Normalized IBS Matrix

fireProgress

protected static void fireProgress(int percent,
                                   ProgressListener listener)