public class AnnotateTOPMwSAMPlugin
extends AbstractPlugin
This class reads in SAM mapping results tests them against an anchor map and creates a updated HDF5 TOPM file. TODO:
public AnnotateTOPMwSAMPlugin()
public AnnotateTOPMwSAMPlugin(java.awt.Frame parentFrame)
public void readSAMFile(TagsOnPhysMapHDF5 topm, java.lang.String inputFileName, int tagLengthInLong)
Reads SAM files output from bowtie2
public void setParameters(java.lang.String[] args)
public javax.swing.ImageIcon getIcon()
public java.lang.String getButtonName()
public java.lang.String getToolTipText()
public static void main(java.lang.String[] args)