net.maizegenetics.analysis.gbs

Class SAMConverterPlugin

AbstractPlugin

net.maizegenetics.analysis.gbs.SAMConverterPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class SAMConverterPlugin
extends AbstractPlugin

This class can read in a CBSU TagMapFile into the gbs.TagsOnPhysicalMap data structure.

Constructor Detail

SAMConverterPlugin

public SAMConverterPlugin()

SAMConverterPlugin

public SAMConverterPlugin(java.awt.Frame parentFrame,
                          boolean isInteractive)

Method Detail

postProcessParameters

protected void postProcessParameters()

processData

public DataSet processData(DataSet input)

inputFile

public java.lang.String inputFile()

inputFile

public SAMConverterPlugin inputFile(java.lang.String value)

outputFile

public java.lang.String outputFile()

outputFile

public SAMConverterPlugin outputFile(java.lang.String value)

textOutputFormat

public boolean textOutputFormat()

textOutputFormat

public SAMConverterPlugin textOutputFormat(boolean value)

tagLength

public int tagLength()

tagLength

public SAMConverterPlugin tagLength(int value)

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()