net.maizegenetics.analysis.modelfitter

Class CovariatePermutationTestSpliterator

net.maizegenetics.analysis.modelfitter.CovariatePermutationTestSpliterator

Direct Known Subclasses:

AddDomPermutationTestSpliterator

public class CovariatePermutationTestSpliterator

A Spliterator that uses the covariate from an AdditiveSite to test it against a baseModel and a list of permuted data sets using a fixed effect linear model. This class is used as part of stepwise model fitting to process a list of AdditiveSites. The permutation test is used to determine the entry and exit limits to be used for model fitting.

Field Detail

myPermutedData

protected java.util.List<kotlin.Array[]> myPermutedData

mySites

protected java.util.List<net.maizegenetics.analysis.modelfitter.AdditiveSite> mySites

myBaseModel

protected java.util.List<net.maizegenetics.stats.linearmodels.ModelEffect> myBaseModel

origin

protected int origin

end

protected int end

Constructor Detail

CovariatePermutationTestSpliterator

public CovariatePermutationTestSpliterator(java.util.List<kotlin.Array[]> permutedData,
                                           java.util.List<net.maizegenetics.analysis.modelfitter.AdditiveSite> siteList,
                                           java.util.List<net.maizegenetics.stats.linearmodels.ModelEffect> baseModel)

Method Detail

tryAdvance

public boolean tryAdvance(java.util.function.Consumer<? super double[]> action)

trySplit

public java.util.Spliterator<kotlin.Array[]> trySplit()

estimateSize

public long estimateSize()

characteristics

public int characteristics()