public class StepwiseOLSModelFitterPlugin
extends AbstractPlugin
Stepwise Ordinary Least Squares model fitter
public StepwiseOLSModelFitterPlugin(java.awt.Frame parentFrame,
boolean isInteractive)
public StepwiseOLSModelFitterPlugin()
protected void preProcessParameters(DataSet input)
protected void postProcessParameters()
public javax.swing.ImageIcon getIcon()
public java.lang.String getButtonName()
public java.lang.String getToolTipText()
public java.lang.String getCitation()
public TableReport runPlugin(DataSet input)
Convenience method to run plugin with one return object.
public net.maizegenetics.analysis.modelfitter.StepwiseOLSModelFitter.MODEL_TYPE modelType()
The model selection criteria used to determine which terms enter the model and how many. Value must be one of pvalue, bic, mbic, or aic
public StepwiseOLSModelFitterPlugin modelType(net.maizegenetics.analysis.modelfitter.StepwiseOLSModelFitter.MODEL_TYPE value)
Set Model type. The model selection criteria used to determine which terms enter the model and how many. Value must be one of pvalue, bic, mbic, or aic
value - Model typepublic java.lang.Double enterlimit()
The enter limit or maximum p-value for which a term can enter the model
public StepwiseOLSModelFitterPlugin enterlimit(java.lang.Double value)
Set Entry limit. The enter limit or maximum p-value for which a term can enter the model
value - Entry limitpublic java.lang.Double exitlimit()
A term exits the model on a backward step if its p-value is greater than this value
public StepwiseOLSModelFitterPlugin exitlimit(java.lang.Double value)
Set Exit limit. A term exits the model on a backward step if its p-value is greater than this value
value - Exit limitpublic java.lang.Integer maxNumberOfMarkers()
The maximum number of markers that will be fit, if the enter limit is not reached first
public StepwiseOLSModelFitterPlugin maxNumberOfMarkers(java.lang.Integer value)
Set Maximum markers. The maximum number of markers that will be fit, if the enter limit is not reached first
value - Maximum markerspublic java.lang.Boolean nestMarkers()
Should markers be nested within a model factor
public StepwiseOLSModelFitterPlugin nestMarkers(java.lang.Boolean value)
Set Nest markers. Should markers be nested within a model factor
value - Nest markerspublic java.lang.String nestingFactor()
Nest markers within this factor.
public StepwiseOLSModelFitterPlugin nestingFactor(java.lang.String value)
Set Nesting factor. Nest markers within this factor.
value - Nesting factorpublic java.lang.Integer numberOfPermutations()
Number of permutations for the model to determine an empirical alpha
public StepwiseOLSModelFitterPlugin numberOfPermutations(java.lang.Integer value)
Set Number of permutations. Number of permutations for the model to determine an empirical alpha
value - Number of permutations