net.maizegenetics.analysis.phg

Class ParseGVCF

net.maizegenetics.analysis.phg.ParseGVCF

public class ParseGVCF

Method Detail

parse

public static Tuple<java.util.List,java.util.concurrent.BlockingQueue> parse(java.lang.String filename)

stream

public static Tuple<java.util.List,java.util.stream.Stream> stream(java.lang.String filename)

The returns a list of the GVCF header lines and a stream of the processed data lines. If you want the stream to return the data lines in order found in the file, do not call parallel().

Parameters:

filename - GVCF filename

Returns:

org.jetbrains.dokka.NodeRenderContent@73cef198: list of header lines and stream of processed data lines