DonorHypoth

net.maizegenetics.analysis.popgen.DonorHypoth

```
public class DonorHypoth
```

Field Detail

targetTaxon
```
public int targetTaxon
```

donor1Taxon
```
public int donor1Taxon
```

donor2Taxon
```
public int donor2Taxon
```

startBlock
```
public int startBlock
```

focusBlock
```
public int focusBlock
```

endBlock
```
public int endBlock
```

pError
```
public double pError
```

pHeterozygous
```
public double pHeterozygous
```

pHomoD1
```
public double pHomoD1
```

pHomoD2
```
public double pHomoD2
```

totalSites
```
public int totalSites
```

mendelianErrors
```
public int mendelianErrors
```

startSite
```
public int startSite
```

endSite
```
public int endSite
```

phasedResults
```
public kotlin.Array[] phasedResults
```

byErrorRateOrdering

public static com.google.common.collect.Ordering<net.maizegenetics.analysis.popgen.DonorHypoth> byErrorRateOrdering

byPrevalenceOrdering

public static com.google.common.collect.Ordering<net.maizegenetics.analysis.popgen.DonorHypoth> byPrevalenceOrdering

Constructor Detail

DonorHypoth

public DonorHypoth(int targetTaxon,
                   int donor1Taxon,
                   int donor2Taxon,
                   int startBlock,
                   int focusBlock,
                   int endBlock,
                   int totalSites,
                   int mendelianErrors)

DonorHypoth

public DonorHypoth(int targetTaxon,
                   int donor1Taxon,
                   int donor2Taxon,
                   int startBlock,
                   int focusBlock,
                   int endBlock)

Method Detail

getPhaseForSite

public byte getPhaseForSite(int site)

getErrorRate
```
public double getErrorRate()
```

isInbred
```
public boolean isInbred()
```

getFocusStartSite
```
public int getFocusStartSite()
```

getFocusEndSite
```
public int getFocusEndSite()
```

equals

public boolean equals(java.lang.Object obj)

compareTo
```
public int compareTo(DonorHypoth o)
```

hashCode
```
public int hashCode()
```

toString
```
public java.lang.String toString()
```

Class DonorHypoth

Field Detail

targetTaxon

donor1Taxon

donor2Taxon

startBlock

focusBlock

endBlock

pError

pHeterozygous

pHomoD1

pHomoD2

totalSites

mendelianErrors

startSite

endSite

phasedResults

byErrorRateOrdering

byPrevalenceOrdering

Constructor Detail

DonorHypoth

DonorHypoth

Method Detail

getPhaseForSite

getErrorRate

isInbred

getFocusStartSite

getFocusEndSite

equals

compareTo

hashCode

toString