net.maizegenetics.analysis.popgen

Class LDResult

net.maizegenetics.analysis.popgen.LDResult

public class LDResult

Container class for reporting LD results. This class could still be expanded to include the two sites with various sort approaches. The reason for this functionality is so that classes can calculate LD for billions of site pairs, but only retain the most significant.

Field Detail

byR2Ordering

public static com.google.common.collect.Ordering<net.maizegenetics.analysis.popgen.LDResult> byR2Ordering

byPValueOrdering

public static com.google.common.collect.Ordering<net.maizegenetics.analysis.popgen.LDResult> byPValueOrdering

Constructor Detail

LDResult

public LDResult(int site1,
                int site2,
                float r2,
                float dprime,
                float p,
                int n)

Method Detail

r2

public float r2()

dPrime

public float dPrime()

p

public float p()

n

public int n()

site1

public int site1()

site2

public int site2()

toString

public java.lang.String toString()