net.maizegenetics.dna.map

Class Chromosome

net.maizegenetics.dna.map.Chromosome

public class Chromosome

Defines the chromosome structure and length. The name and length recorded for each chromosome.

Field Detail

UNKNOWN

public static Chromosome UNKNOWN

Constructor Detail

Chromosome

public Chromosome(java.lang.String name)

Deprecated.

Method Detail

instance

public static Chromosome instance(java.lang.String name)

Creates Chromosome instance with specified name. Returns single instance given same name multiple times.

Parameters:

name - chromosome name

Returns:

org.jetbrains.dokka.NodeRenderContent@34cd6ba1: Chromosome

instance

public static Chromosome instance(int name)

Creates Chromosome instance with specified name. Returns single instance given same name multiple times.

Parameters:

name - chromosome name

Returns:

org.jetbrains.dokka.NodeRenderContent@34da457e: Chromosome

instance

public static Chromosome instance(java.lang.String name,
                                  int length,
                                  GeneralAnnotation features)

getName

public java.lang.String getName()

getChromosomeNumber

public int getChromosomeNumber()

Returns the integer value of the chromosome (if name is not a number then Integer.MAX_VALUE is returned)

getLength

public int getLength()

getAnnotation

public GeneralAnnotation getAnnotation()

toString

public java.lang.String toString()

hashCode

public int hashCode()

equals

public boolean equals(java.lang.Object obj)

compareTo

public int compareTo(Chromosome o)

Compares chromosomes numerically if both are numbers. Otherwise compares as strings.

Parameters:

o - other chromosome

Returns:

org.jetbrains.dokka.NodeRenderContent@71c4a02b: a negative integer, zero, or a positive integer as this object is less than, equal to, or greater than the specified object.