Hierarchy For Package net.maizegenetics.dna.map

Package Hierarchies:

• All Packages

Class Hierarchy

• net.maizegenetics.dna.map.TagLocus
• net.maizegenetics.dna.map.GeneralPosition.Builder
• net.maizegenetics.dna.map.UpdateTOPMWithGeneticMapping
• net.maizegenetics.dna.map.GenomeSequenceBuilder
  • net.maizegenetics.dna.map.GVCFGenomeSequenceBuilder
• net.maizegenetics.dna.map.PETagsOnPhysicalMapV3 (implements net.maizegenetics.dna.tag.Tags)
• net.maizegenetics.dna.map.TagGWASMapInfo
• net.maizegenetics.dna.map.GenomeFeatureBuilder
• net.maizegenetics.dna.map.DonorHaplotypes
• net.maizegenetics.dna.tag.AbstractTags (implements net.maizegenetics.dna.tag.Tags)
  • net.maizegenetics.dna.tag.AbstractTagsHDF5
    • net.maizegenetics.dna.map.TagGWASMap
  • net.maizegenetics.dna.map.AbstractTagsOnPhysicalMap (implements net.maizegenetics.dna.map.TOPMInterface)
    • net.maizegenetics.dna.map.TagsOnPhysMapHDF5 (implements net.maizegenetics.dna.map.TOPMInterface)
    • net.maizegenetics.dna.map.TagsOnPhysicalMap
    • net.maizegenetics.dna.map.TagsOnPhysicalMapV3 (implements net.maizegenetics.dna.map.TOPMInterface)
  • net.maizegenetics.dna.map.TagsOnGeneticMap
• net.maizegenetics.dna.map.TOPMTableReport (implements net.maizegenetics.util.TableReport)
• net.maizegenetics.dna.map.GenomeFeatureMap
• net.maizegenetics.dna.tag.AbstractPETags (implements net.maizegenetics.dna.tag.PETags)
  • net.maizegenetics.dna.map.AbstractPETagsOnPhysicalMap
    • net.maizegenetics.dna.map.PETagsOnPhysicalMap
• net.maizegenetics.dna.map.PositionList.PositionListCollector
• net.maizegenetics.dna.map.TOPMUtils
• net.maizegenetics.dna.map.PositionListTableReport (implements net.maizegenetics.util.TableReport)
• net.maizegenetics.dna.map.TagGeneticMappingInfo
• net.maizegenetics.dna.map.GenomeFeature
• net.maizegenetics.dna.map.TagMappingInfoV3
• net.maizegenetics.dna.map.PositionListIOUtils
• net.maizegenetics.dna.map.GenomeFeatureMapBuilder
• net.maizegenetics.dna.map.TagMappingInfo
• net.maizegenetics.dna.map.GeneralPosition (implements net.maizegenetics.dna.map.Position)
• net.maizegenetics.dna.map.PositionListBuilder
• net.maizegenetics.dna.map.Chromosome

Interface Hierarchy

• net.maizegenetics.dna.map.GenomeSequence
  • net.maizegenetics.dna.map.GVCFGenomeSequence
• net.maizegenetics.dna.map.Position
• net.maizegenetics.dna.map.PositionList
• net.maizegenetics.dna.tag.Tags
  • net.maizegenetics.dna.map.TOPMInterface

Enum Hierarchy

• net.maizegenetics.dna.map.TagMappingInfoV3.Aligner
• net.maizegenetics.dna.map.AbstractPETagsOnPhysicalMap.PETagType
• net.maizegenetics.dna.map.TagsOnPhysicalMap.SAMFormat