net.maizegenetics.dna.snp

Class Translate

net.maizegenetics.dna.snp.Translate

Direct Known Subclasses:

TranslateNegative

public class Translate

This translates filtered taxa and sites. Also indicates masking, but this implementation has no mask.

Method Detail

taxon

public int taxon(int taxon)

site

public int site(int site)

taxonSite

public long taxonSite(int taxon,
                      int site)

hasSiteTranslations

public boolean hasSiteTranslations()

hasTaxaTranslations

public boolean hasTaxaTranslations()

siteTranslations

public kotlin.Array[] siteTranslations()

taxaTranslations

public kotlin.Array[] taxaTranslations()

numTaxa

public int numTaxa()

numSites

public int numSites()