net.maizegenetics.dna.snp.genotypecall

Class DifferenceGenotypeCallTable

net.maizegenetics.dna.snp.genotypecall.DifferenceGenotypeCallTable

public class DifferenceGenotypeCallTable

Constructor Detail

DifferenceGenotypeCallTable

public DifferenceGenotypeCallTable(GenotypeCallTable base,
                                   java.util.List<java.lang.Integer> hybrids,
                                   java.util.List<java.lang.Integer> parents)

Method Detail

genotype

public byte genotype(int taxon,
                     int site)

genotypeAsString

public java.lang.String genotypeAsString(int taxon,
                                         int site)

genotypeAsStringRange

public java.lang.String genotypeAsStringRange(int taxon,
                                              int startSite,
                                              int endSite)

diploidAsString

public java.lang.String diploidAsString(int site,
                                        byte value)

transposeData

public void transposeData(boolean siteInnerLoop)

isSiteOptimized

public boolean isSiteOptimized()