| Interface | Description |
|---|---|
| SiteScore |
| Class | Description |
|---|---|
| AlleleDepth | |
| AlleleDepthBuilder | |
| AlleleDepthUtil |
Depth compression utility. Depths are scored in byte (256 states). 0 to 127 are used for exact depth values. -128 to -1 are used for log approximations (1.0746^(-x)). This permits depths upto 10,482 to be stored with exact precision for low values, and <3% error for high depths.
|
| AlleleProbability | |
| AlleleProbabilityBuilder | |
| Dosage | |
| DosageBuilder | |
| FilterAlleleDepth | |
| FilterAlleleProbability | |
| FilterDosage | |
| FilterHDF5AlleleDepth | |
| FilterReferenceProbability | |
| HDF5AlleleDepth | |
| HDF5AlleleDepthBuilder |
Builder to store information on DNA read depths.
|
| MaskAlleleDepth | |
| MaskAlleleProbability | |
| MaskDosage | |
| MaskReferenceProbability | |
| ReferenceProbability | |
| ReferenceProbabilityBuilder | |
| SiteScoreUtil |