net.maizegenetics.dna.tag Class Hierarchy

Class Hierarchy

net.maizegenetics.dna.tag.AbstractTags (implements net.maizegenetics.dna.tag.Tags)
- net.maizegenetics.dna.tag.AbstractTagsByTaxa (implements net.maizegenetics.dna.tag.TagsByTaxa)
  - net.maizegenetics.dna.tag.TagsByTaxaByte
  - net.maizegenetics.dna.tag.TagsByTaxaByteFileMap
  - net.maizegenetics.dna.tag.TagsByTaxaByteFileMapSeq
  - net.maizegenetics.dna.tag.TagsByTaxaByteHDF5TagGroups
  - net.maizegenetics.dna.tag.TagsByTaxaByteHDF5TaxaGroups
  - net.maizegenetics.dna.tag.TagsByTaxaShort
- net.maizegenetics.dna.tag.AbstractTagsHDF5
- net.maizegenetics.dna.tag.TagCounts
  - net.maizegenetics.dna.tag.TagCountMutable
    - net.maizegenetics.dna.tag.UTagCountMutable
net.maizegenetics.dna.tag.AbstractPETags (implements net.maizegenetics.dna.tag.PETags)
- net.maizegenetics.dna.tag.PETagCounts
net.maizegenetics.dna.tag.AbstractTag (implements net.maizegenetics.dna.tag.Tag)
net.maizegenetics.dna.tag.TagBuilder
net.maizegenetics.dna.tag.GBSHDF5Constants
net.maizegenetics.dna.tag.SAMUtils
net.maizegenetics.dna.tag.TagsByTaxaUtils
net.maizegenetics.dna.tag.ReadsByTaxa (implements net.maizegenetics.dna.tag.Reads)
net.maizegenetics.dna.tag.UTagPairs
net.maizegenetics.dna.tag.TaxaDistBuilder
net.maizegenetics.dna.tag.RepGenSQLite (implements net.maizegenetics.dna.tag.RepGenDataWriter)
net.maizegenetics.dna.tag.FastqReader
net.maizegenetics.dna.tag.TagDataSQLite (implements net.maizegenetics.dna.tag.TagDataWriter)

net.maizegenetics.dna.tag.PETags
net.maizegenetics.dna.tag.Reads
net.maizegenetics.dna.tag.RepGenData
- net.maizegenetics.dna.tag.RepGenDataWriter
net.maizegenetics.dna.tag.Tag
net.maizegenetics.dna.tag.TagData
- net.maizegenetics.dna.tag.TagDataWriter
net.maizegenetics.dna.tag.Tags
- net.maizegenetics.dna.tag.TagsByTaxa
net.maizegenetics.dna.tag.TaxaDistribution