net.maizegenetics.matrixalgebra.Matrix

Class ColtDoubleMatrix

net.maizegenetics.matrixalgebra.Matrix.ColtDoubleMatrix

All Implemented Interfaces:

DoubleMatrix

public class ColtDoubleMatrix
implements DoubleMatrix

Constructor Detail

ColtDoubleMatrix

public ColtDoubleMatrix(cern.colt.matrix.DoubleMatrix2D aMatrix)

ColtDoubleMatrix

public ColtDoubleMatrix(int row,
                        int col)

ColtDoubleMatrix

public ColtDoubleMatrix(int row,
                        int col,
                        kotlin.Array[] values)

ColtDoubleMatrix

public ColtDoubleMatrix(int row,
                        int col,
                        double value)

ColtDoubleMatrix

public ColtDoubleMatrix(kotlin.Array[] values)

ColtDoubleMatrix

public ColtDoubleMatrix(DistanceMatrix values)

ColtDoubleMatrix

public ColtDoubleMatrix(int size)

ColtDoubleMatrix

public ColtDoubleMatrix(kotlin.Array[] diagonal)

Method Detail

get

public double get(int row,
                  int col)

getChecked

public double getChecked(int row,
                         int col)

set

public void set(int row,
                int col,
                double value)

setChecked

public void setChecked(int row,
                       int col,
                       double value)

transpose

public DoubleMatrix transpose()

mult

public DoubleMatrix mult(DoubleMatrix dm,
                         boolean transpose,
                         boolean transposedm)

multadd

public DoubleMatrix multadd(DoubleMatrix A,
                            DoubleMatrix B,
                            double alpha,
                            double beta,
                            boolean transpose,
                            boolean transposeA)

mult

public DoubleMatrix mult(DoubleMatrix dm)

crossproduct

public DoubleMatrix crossproduct()

crossproduct

public DoubleMatrix crossproduct(DoubleMatrix dm)

tcrossproduct

public DoubleMatrix tcrossproduct()

tcrossproduct

public DoubleMatrix tcrossproduct(DoubleMatrix dm)

concatenate

public DoubleMatrix concatenate(DoubleMatrix dm,
                                boolean rows)

inverse

public DoubleMatrix inverse()

invert

public boolean invert()

generalizedInverse

public DoubleMatrix generalizedInverse()

solve

public DoubleMatrix solve(DoubleMatrix Y)

numberOfRows

public int numberOfRows()

numberOfColumns

public int numberOfColumns()

row

public DoubleMatrix row(int i)

column

public DoubleMatrix column(int j)

getXtXGM

public DoubleMatrix[] getXtXGM()

copy

public DoubleMatrix copy()

getEigenvalueDecomposition

public EigenvalueDecomposition getEigenvalueDecomposition()

getSingularValueDecomposition

public SingularValueDecomposition getSingularValueDecomposition()

getQRDecomposition

public QRDecomposition getQRDecomposition()

minus

public DoubleMatrix minus(DoubleMatrix dm)

minusEquals

public void minusEquals(DoubleMatrix dm)

plus

public DoubleMatrix plus(DoubleMatrix dm)

plusEquals

public void plusEquals(DoubleMatrix dm)

scalarAdd

public DoubleMatrix scalarAdd(double s)

scalarAddEquals

public void scalarAddEquals(double s)

scalarMult

public DoubleMatrix scalarMult(double s)

scalarMultEquals

public void scalarMultEquals(double s)

getSelection

public DoubleMatrix getSelection(kotlin.Array[] rows,
                                 kotlin.Array[] columns)

rowSum

public double rowSum(int row)

columnSum

public double columnSum(int column)

columnRank

public int columnRank()

generalizedInverseWithRank

public DoubleMatrix generalizedInverseWithRank(kotlin.Array[] rank)

to1DArray

public kotlin.Array[] to1DArray()

toArray

public kotlin.Array[] toArray()

toString

public java.lang.String toString()