net.maizegenetics.matrixalgebra.Matrix

Class EJMLDoubleMatrix

net.maizegenetics.matrixalgebra.Matrix.EJMLDoubleMatrix

All Implemented Interfaces:

DoubleMatrix

public class EJMLDoubleMatrix
implements DoubleMatrix

Constructor Detail

EJMLDoubleMatrix

public EJMLDoubleMatrix(@NotNull
                        org.ejml.data.DMatrixRMaj matrix)

EJMLDoubleMatrix

public EJMLDoubleMatrix(int row,
                        int col)

EJMLDoubleMatrix

public EJMLDoubleMatrix(int row,
                        int col,
                        @NotNull
                        kotlin.Array[] values)

EJMLDoubleMatrix

public EJMLDoubleMatrix(int row,
                        int col,
                        double value)

EJMLDoubleMatrix

public EJMLDoubleMatrix(@NotNull
                        kotlin.Array[] values)

EJMLDoubleMatrix

public EJMLDoubleMatrix(@NotNull
                        DistanceMatrix dist)

EJMLDoubleMatrix

public EJMLDoubleMatrix(int size)

EJMLDoubleMatrix

public EJMLDoubleMatrix(@NotNull
                        kotlin.Array[] diagonal)

Method Detail

getTol

public double getTol()

getMyMatrix

@NotNull
public org.ejml.data.DMatrixRMaj getMyMatrix()

setMyMatrix

public void setMyMatrix(@NotNull
                        org.ejml.data.DMatrixRMaj p)

get

public double get(int row,
                  int col)

getChecked

public double getChecked(int row,
                         int col)

set

public void set(int row,
                int col,
                double value)

setChecked

public void setChecked(int row,
                       int col,
                       double value)

transpose

@NotNull
public DoubleMatrix transpose()

mult

@NotNull
public DoubleMatrix mult(@NotNull
                                  DoubleMatrix dm,
                                  boolean transpose,
                                  boolean transposedm)

mult

@NotNull
public DoubleMatrix mult(@NotNull
                                  DoubleMatrix dm)

multadd

@NotNull
public DoubleMatrix multadd(@NotNull
                                     DoubleMatrix A,
                                     @Nullable
                                     DoubleMatrix B,
                                     double alpha,
                                     double beta,
                                     boolean transpose,
                                     boolean transposeA)

crossproduct

@NotNull
public DoubleMatrix crossproduct()

crossproduct

@NotNull
public DoubleMatrix crossproduct(@NotNull
                                          DoubleMatrix dm)

tcrossproduct

@NotNull
public DoubleMatrix tcrossproduct()

tcrossproduct

@NotNull
public DoubleMatrix tcrossproduct(@NotNull
                                           DoubleMatrix dm)

concatenate

@NotNull
public DoubleMatrix concatenate(@NotNull
                                         DoubleMatrix dm,
                                         boolean rows)

inverse

@Nullable
public DoubleMatrix inverse()

invert

public boolean invert()

generalizedInverse

@NotNull
public DoubleMatrix generalizedInverse()

generalizedInverseWithRank

@NotNull
public DoubleMatrix generalizedInverseWithRank(@NotNull
                                                        kotlin.Array[] rank)

solve

@NotNull
public DoubleMatrix solve(@Nullable
                                   DoubleMatrix Y)

numberOfRows

public int numberOfRows()

numberOfColumns

public int numberOfColumns()

row

@NotNull
public DoubleMatrix row(int i)

column

@NotNull
public DoubleMatrix column(int j)

getXtXGM

@NotNull
public DoubleMatrix[] getXtXGM()

copy

@NotNull
public DoubleMatrix copy()

getEigenvalueDecomposition

@NotNull
public EigenvalueDecomposition getEigenvalueDecomposition()

getSingularValueDecomposition

@NotNull
public SingularValueDecomposition getSingularValueDecomposition()

getQRDecomposition

@NotNull
public QRDecomposition getQRDecomposition()

minus

@NotNull
public DoubleMatrix minus(@NotNull
                                   DoubleMatrix dm)

minusEquals

public void minusEquals(@NotNull
                        DoubleMatrix dm)

plus

@NotNull
public DoubleMatrix plus(@NotNull
                                  DoubleMatrix dm)

plusEquals

public void plusEquals(@NotNull
                       DoubleMatrix dm)

scalarAdd

@NotNull
public DoubleMatrix scalarAdd(double s)

scalarAddEquals

public void scalarAddEquals(double s)

scalarMult

@NotNull
public DoubleMatrix scalarMult(double s)

scalarMultEquals

public void scalarMultEquals(double s)

getSelection

@NotNull
public DoubleMatrix getSelection(@Nullable
                                          kotlin.Array[] rows,
                                          @Nullable
                                          kotlin.Array[] columns)

rowSum

public double rowSum(int row)

columnSum

public double columnSum(int column)

columnRank

public int columnRank()

to1DArray

@NotNull
public kotlin.Array[] to1DArray()

toArray

@NotNull
public kotlin.Array[] toArray()