net.maizegenetics.stats.linearmodels

Class SweepFastNestedModel

net.maizegenetics.stats.linearmodels.SweepFastNestedModel

public class SweepFastNestedModel

Constructor Detail

SweepFastNestedModel

public SweepFastNestedModel(java.util.ArrayList<net.maizegenetics.stats.linearmodels.ModelEffect> modelEffects,
                            kotlin.Array[] data)

The constructor for this class. It will calculate the SS and df for marker after all other effects in the model except taxa nested in marker. Taxa in marker will then be added to the model and its SS and df calculated. Error SS and df will be the final residual.

Parameters:

data - the dependent variable

Method Detail

getMarkerSSdf

public kotlin.Array[] getMarkerSSdf()

getErrorSSdf

public kotlin.Array[] getErrorSSdf()

getTaxaInMarkerSSdf

public kotlin.Array[] getTaxaInMarkerSSdf()

getModelcfmSSdf

public kotlin.Array[] getModelcfmSSdf()

getBeta

public kotlin.Array[] getBeta()

getInverseOfXtX

public DoubleMatrix getInverseOfXtX()