net.maizegenetics.taxa

Class Taxon.Builder

net.maizegenetics.taxa.Taxon.Builder

Enclosing class:

Taxon

public static class Taxon.Builder

A builder for creating immutable Taxon instances.

Example:

   Taxon cp= new Taxon.Builder("Z001E0001:Line:mays:Zea")
        .inbreedF(0.99)
        .parents("B73","B97")
        .pedigree("(B73xB97)S6I1")
        .addAnno("Group","Dent")
        .build();

This would create an Taxon.

Constructor Detail

Builder

public Builder(Taxon aTaxon)

Constructor for Builder, requires a Taxon object

Parameters:

aTaxon - taxon object

Builder

public Builder(java.lang.String aTaxonName)

Constructor for Builder, requires a Taxon name

Parameters:

aTaxonName - name of the taxon

Method Detail

addAnno

public net.maizegenetics.taxa.Taxon.Builder addAnno(java.lang.String key,
                                                    java.lang.String value)

Add non-standard annotation

addAnno

public net.maizegenetics.taxa.Taxon.Builder addAnno(java.lang.String key,
                                                    java.lang.Number value)

Add non-standard annotation

name

public net.maizegenetics.taxa.Taxon.Builder name(java.lang.String newName)

Set sex: 0=both, 1=female, 2=male (default=0 Both)

sex

public net.maizegenetics.taxa.Taxon.Builder sex(byte val)

Set sex: 0=both, 1=female, 2=male (default=0 Both)

inbreedF

public net.maizegenetics.taxa.Taxon.Builder inbreedF(float val)

Set inbreeding coefficient (default=Float.NaN)

parents

public net.maizegenetics.taxa.Taxon.Builder parents(java.lang.String mom,
                                                    java.lang.String dad)

Set text definition of parents (default=null)

pedigree

public net.maizegenetics.taxa.Taxon.Builder pedigree(java.lang.String val)

Set text definition of pedigree (default=null)

synonym

public net.maizegenetics.taxa.Taxon.Builder synonym(java.lang.String val)

Set text definition of pedigree (default=null)

build

public Taxon build()