net.maizegenetics.util

Interface ProgressListener

All Known Subinterfaces:

Plugin

All Known Implementing Classes:

AMatrixPlugin, AbstractDisplayPlugin, AbstractPlugin, AddDistanceMatrixPlugin, AddReferenceAlleleToHDF5Plugin, AddReferenceToGenotypePlugin, AdditiveSiteStorePlugin, AdjustPhasingPlugin, AnnotateTOPMwSAMPlugin, ArchaeopteryxPlugin, AvgPhenotypeByTaxaPlugin, BinaryToTextPlugin, BoxCoxTransformationPlugin, BuildUnfinishedHDF5GenotypesPlugin, CallParentAllelesPlugin, ChartDisplayPlugin, ClusterGenotypesPlugin, ColumnsToBinaryFullGenomeTablePlugin, ColumnsToBinarySNPOnlyTablePlugin, CombineDataSetsPlugin, CompareGenosBetweenHapMapFilesPlugin, ContigPETagCountPlugin, ConvertAlignmentCoordinatesPlugin, ConvertOldFastqToModernFormatPlugin, ConvertTreeNamesPlugin, CountAssociationsPlugin, CreateHybridGenotypesPlugin, CreateTreePlugin, DiscoverySNPCallerPlugin, DiscoverySNPCallerPluginV2, DistanceMatrixPlugin, DistanceMatrixRangesPlugin, EqtlAssociationPlugin, ExportMultiplePlugin, ExportPlugin, ExtractHapmapSubsetPlugin, FILLINFindHaplotypesPlugin, FILLINImputationPlugin, FSFHapImputationPlugin, FastMultithreadedAssociationPlugin, FastqToPETagCountPlugin, FastqToTBTPlugin, FastqToTagCountPlugin, FeatureListToPositionsPlugin, FileLoadPlugin, FilterAlignmentPlugin, FilterDataSetPlugin, FilterSiteBuilderPlugin, FilterSiteNamePlugin, FilterSubsetPlugin, FilterTaxaBuilderPlugin, FilterTaxaPropertiesPlugin, FilterTraitsPlugin, FindInversionsPlugin, FindMergeHaplotypesPlugin, FixedEffectLMPlugin, GBSSeqToTagDBPlugin, GOBIIPlugin, GWAS_IFLPlugin, GenomeAnnosDBQueryToPositionListPlugin, GenomicSelectionPlugin, GenosToABHPlugin, GenotypeSummaryPlugin, GenotypeToAdditiveValuesPlugin, GetPhenotypeFromB4RPlugin, GetPositionListPlugin, GetTagSequenceFromDBPlugin, GetTagTaxaDistFromDBPlugin, GetTaxaListPlugin, HDF5SummaryPlugin, HMatrixPlugin, HapBreakpoints_IFLFilePlugin, HetsToUnknownPlugin, IdentityRecognitionPlugin, ImputationAccuracyPlugin, ImputationPlugin, ImputeProgenyStatesPlugin, IndelsToUnknownPlugin, IntersectionAlignmentPlugin, KeepSpecifiedReadsinFastqPlugin, KeepSpecifiedSitesInTOPMPlugin, KinshipPlugin, KmerCountingPlugin, KmerToTBTPlugin, KmerToTagCountPlugin, LDKNNiImputationHetV2Plugin, LDKNNiImputationHetV3Plugin, LDKNNiImputationPlugin, LIXPlugin, LinkageDiseqDisplayPlugin, LinkageDisequilibriumPlugin, ListPluginParameters, ListPlugins, LoadRNAContigsToGBSDBPlugin, MLMPlugin, ManhattanDisplayPlugin, MarkerDNARun_IFLFilePlugin, MaskGenotypePlugin, MeanR2FromLDPlugin, MemoryUsagePlugin, MergeAlignmentsSameSitesPlugin, MergeBreakpointFilesPlugin, MergeDuplicateSNPsPlugin, MergeGenotypeTablesPlugin, MergeGenotypeTablesPluginV2, MergeHDF5GenotypesSameSitesPlugin, MergeMultipleTOPMPlugin, MergeMultipleTagCountPlugin, MergePETagCountPlugin, MergeRenameDeleteTaxaPlugin, MergeTagsByTaxaFilesByRowPlugin, MergeTagsByTaxaFilesPlugin, MergeTreesPlugin, ModifyTBTHDF5Plugin, MonetDB_IFLFilePlugin, MultiDimensionalScalingPlugin, NumericalGenotypePlugin, PanAAddPosToTagMapPlugin, PanABuildPivotTBTPlugin, PanABuildTagBlockPosPlugin, PanABuildTagGWASMapPlugin, PanABuildTrainingSetPlugin, PanAFilteringTagMapPlugin, PanAH5ToAnchorPlugin, PanAMergeMappingResultPlugin, PanAModelTrainingPlugin, PanAPredictionPlugin, PanAReadDigestPlugin, PanAReadToKmerPlugin, PanASamToMultiPositionTOPMPlugin, PanASplitTBTPlugin, PanASplitTagBlockPosPlugin, PanATagGWASMappingPlugin, PanATagMapToFastaPlugin, ParentPhasingPlugin, PassThroughPlugin, PlinkLoadPlugin, PreProcessGOBIIMappingFilePlugin, PreferencesDialog, PrincipalComponentsPlugin, ProductionPipeline, ProductionSNPCallerPlugin, ProductionSNPCallerPluginV2, ProjectPcsAndRunModelSelectionPlugin, ProjectionLoadPlugin, QQDisplayPlugin, QseqToPETagCountPlugin, QseqToTBTPlugin, QseqToTagCountPlugin, RGBSProductionSNPCallerPlugin, RNADeMultiPlexSeqToDBPlugin, RNADeMultiplexProductionPlugin, RampSeqAlignFromBlastTags, RandomGenotypeImputationPlugin, ReImputeUpdatedTaxaByFILLINPlugin, RemoveBranchLengthsPlugin, RemoveIndelsForBeaglePlugin, RemoveNaNFromDistanceMatrixPlugin, RepGenAlignerPlugin, RepGenLDAnalysisPlugin, RepGenLoadSeqToDBPlugin, RepGenPhase2AlignerPlugin, ResamplingGWASPlugin, RidgeRegressionEmmaPlugin, SAMConverterPlugin, SAMToGBSdbPlugin, SAMWGMapConverterPlugin, SNPCutPosTagVerificationPlugin, SNPQualityProfilerPlugin, SeparatePlugin, SeqToTBTHDF5Plugin, SequenceDiversityPlugin, SetLowDepthGenosToMissingPlugin, ShowParameterCachePlugin, SortGenotypeFilePlugin, SortTaxaAlphabeticallyPlugin, SplitFile_IFLFilePlugin, SplitHDF5ByChromosomePlugin, StepwiseAdditiveModelFitterPlugin, StepwiseOLSModelFitterPlugin, SubsetTreePlugin, SubtractDistanceMatrixPlugin, SubtractGenotypesPlugin, SubtractPhenotypeByTaxaPlugin, SynonymizerPlugin, TOPMSummaryPlugin, TableDisplayPlugin, TagAgainstAnchorPlugin, TagCountToFastqPlugin, TagExportToFastqPlugin, TasselLogging, TextToBinaryPlugin, ThinSitesByPositionPlugin, TransformDataPlugin, UTagCountToTagPairPlugin, UTagPairToTOPMPlugin, UnionAlignmentPlugin, UpdateSNPPositionQualityPlugin, VCAPScanPlugin, ViterbiAlgorithmPlugin, WeightedMLMPlugin, WorkflowPlugin, WritePopulationAlignmentPlugin

public ProgressListener

Method Detail

progress

void progress(int percent,
              java.lang.Object meta)

Returns progress of execution.

Parameters:

percent - percent complete

meta - meta data