Uses of Class
net.seninp.gi.logic.SAXMotif

Packages that use SAXMotif

Package	Description
net.seninp.gi.clusterrule
net.seninp.gi.logic	Implements auxiliary functionality.

Uses of SAXMotif in net.seninp.gi.clusterrule

Methods in net.seninp.gi.clusterrule that return types with arguments of type SAXMotif

Modifier and Type	Method and Description
protected ArrayList<SAXMotif>	RuleOrganizer.getAllMotifs(GrammarRules grammarRules) Stores all the sub-sequences that generated by Sequitur rules into an array list sorted by sub-sequence length in ascending order.
protected ArrayList<SAXMotif>	RuleOrganizer.getAllMotifs(GrammarRules grammarRules) Stores all the sub-sequences that generated by Sequitur rules into an array list sorted by sub-sequence length in ascending order.

Methods in net.seninp.gi.clusterrule with parameters of type SAXMotif

Modifier and Type	Method and Description
protected boolean	RuleOrganizer.decideRemove(SAXMotif motif1, SAXMotif motif2, SAXPointsNumber[] pointsNumberRemoveStrategy) Decide which one from overlapping subsequences should be removed.
protected boolean	RuleOrganizer.decideRemove(SAXMotif motif1, SAXMotif motif2, SAXPointsNumber[] pointsNumberRemoveStrategy) Decide which one from overlapping subsequences should be removed.

Uses of SAXMotif in net.seninp.gi.logic

Methods in net.seninp.gi.logic that return SAXMotif

Modifier and Type	Method and Description
SAXMotif	SAXMotif.getSimilarWith()
SAXMotif	SAXMotif.getSimilarWith()

Methods in net.seninp.gi.logic that return types with arguments of type SAXMotif

Modifier and Type	Method and Description
ArrayList<SAXMotif>	SameLengthMotifs.getSameLenMotifs()
ArrayList<SAXMotif>	SameLengthMotifs.getSameLenMotifs()

Methods in net.seninp.gi.logic with parameters of type SAXMotif

Modifier and Type	Method and Description
int	SAXMotif.compareTo(SAXMotif o)
int	SAXMotif.compareTo(SAXMotif o)
void	SAXMotif.setSimilarWith(SAXMotif similarWith)
void	SAXMotif.setSimilarWith(SAXMotif similarWith)

Method parameters in net.seninp.gi.logic with type arguments of type SAXMotif

Modifier and Type	Method and Description
void	SameLengthMotifs.setSameLenMotifs(ArrayList<SAXMotif> sameLenMotifs)
void	SameLengthMotifs.setSameLenMotifs(ArrayList<SAXMotif> sameLenMotifs)