Index (compatibility 4.5.6 API)

A C D E G H I K L M O P Q R S T U V

A

ANNOTATION_URI_BASE - Static variable in enum org.coode.owlapi.obo12.parser.OBOVocabulary: Deprecated.
Use OBOVocabulary.OBO_IRI_BASE
asPrefixOWLOntologyFormat() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormat

C

CLOSE_SQUARE_BRACKET - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
COMMENT - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
COMMENT_END - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
COMMENT_START - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
createFormat() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormatFactory
createParser() - Method in class org.coode.owlapi.obo12.parser.OBO12ParserFactory

D

de.uulm.ecs.ai.owlapi.krssparser - package de.uulm.ecs.ai.owlapi.krssparser
DEFAULT - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: Lexical state.
DLSyntaxHTMLOntologyFormat - Class in uk.ac.manchester.cs.owlapi.dlsyntax: Deprecated.
use DLSyntaxHTMLDocumentFormat
DLSyntaxHTMLOntologyFormat() - Constructor for class uk.ac.manchester.cs.owlapi.dlsyntax.DLSyntaxHTMLOntologyFormat: Deprecated.
DLSyntaxOntologyFormat - Class in uk.ac.manchester.cs.owlapi.dlsyntax: Deprecated.
use DLSyntaxDocumentFormat
DLSyntaxOntologyFormat() - Constructor for class uk.ac.manchester.cs.owlapi.dlsyntax.DLSyntaxOntologyFormat: Deprecated.

E

endFrame() - Method in interface org.coode.owlapi.obo12.parser.OBOParserHandler
endHeader() - Method in interface org.coode.owlapi.obo12.parser.OBOParserHandler
EOF - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: End of File.
ERROR - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.

G

get() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormatFactory
get() - Method in class org.coode.owlapi.obo12.parser.OBO12ParserFactory
getDefaultMIMEType() - Method in class org.coode.owlapi.obo12.parser.OBO12ParserFactory
getHeaderTags() - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
getIdSpaceManager() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormat: Gets the OBO id-space manager.
getInstanceStanzaTags() - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
getIRI() - Method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
getKey() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormat
getKey() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormatFactory
getName() - Method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
getPrefix() - Method in enum org.coode.owlapi.obo12.parser.OBOPrefix
getSupportedFormat() - Method in class org.coode.owlapi.obo12.parser.OBO12ParserFactory
getTermStanzaTags() - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
getTypeDefStanzaTags() - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary

H

handleTagValue(String, String, String, String) - Method in interface org.coode.owlapi.obo12.parser.OBOParserHandler

I

ID2IRI(String) - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary: Converts OBO Ids to IRIs.
ID2IRI(String, IDSpaceManager) - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary: Converts OBO Ids to IRIs.
IGNORE_ONTOLOGYURI - Static variable in class de.uulm.ecs.ai.owlapi.krssparser.KRSS2OntologyFormat: Deprecated.

ignore ontology iri parameter
IN_COMMENT - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: Lexical state.
IN_QUOTED_STRING - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: Lexical state.
IN_STANZA_HEADER - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: Lexical state.
IN_TAG_VALUE - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: Lexical state.
IN_TAG_VALUE_PAIR - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: Lexical state.
IRI2ID(IRI) - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
isAxiomKeyword() - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
isClassExpressionConnectiveKeyword() - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
isClassExpressionQuantiferKeyword() - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
isFrameKeyword() - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
isIgnoreOntologyURI() - Method in class de.uulm.ecs.ai.owlapi.krssparser.KRSS2OntologyFormat: Deprecated.
isOBOIRI(IRI) - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
isPrefixOWLOntologyFormat() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormat
isSectionKeyword() - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.

K

keyword() - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
KRSS2OntologyFormat - Class in de.uulm.ecs.ai.owlapi.krssparser: Deprecated.
use KRSS2DocumentFormat
KRSS2OntologyFormat() - Constructor for class de.uulm.ecs.ai.owlapi.krssparser.KRSS2OntologyFormat: Deprecated.
KRSSOntologyFormat - Class in org.coode.owl.krssparser: Deprecated.
use KRSSDocumentFormat
KRSSOntologyFormat() - Constructor for class org.coode.owl.krssparser.KRSSOntologyFormat: Deprecated.

L

LabelFunctionalFormat - Class in org.obolibrary.owl: Deprecated.
use LabelFunctionalDocumentFormat
LabelFunctionalFormat() - Constructor for class org.obolibrary.owl.LabelFunctionalFormat: Deprecated.
LatexAxiomsListOntologyFormat - Class in org.coode.owlapi.latex: Deprecated.
use LatexAxiomsListDocumentFormat
LatexAxiomsListOntologyFormat() - Constructor for class org.coode.owlapi.latex.LatexAxiomsListOntologyFormat: Deprecated.
LatexOntologyFormat - Class in org.coode.owlapi.latex: Deprecated.
use LatexDocumentFormat
LatexOntologyFormat() - Constructor for class org.coode.owlapi.latex.LatexOntologyFormat: Deprecated.
LEGACY_OBO_IRI_BASE - Static variable in enum org.coode.owlapi.obo12.parser.OBOVocabulary
LINE_COMMENTED_OUT - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.

M

ManchesterOWLSyntax - Enum in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use ManchesterOWLSyntax
ManchesterOWLSyntaxClassExpressionParser - Class in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use ManchesterOWLSyntaxClassExpressionParser
ManchesterOWLSyntaxClassExpressionParser(OWLDataFactory, OWLEntityChecker) - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxClassExpressionParser: Deprecated.
ManchesterOWLSyntaxClassFrameParser - Class in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use ManchesterOWLSyntaxClassFrameParser
ManchesterOWLSyntaxClassFrameParser(OWLDataFactory, OWLEntityChecker) - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxClassFrameParser: Deprecated.
ManchesterOWLSyntaxEditorParser - Class in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use org.semanticweb.owlapi.apibinding.OWLManager#createManchesterParser
ManchesterOWLSyntaxEditorParser(OWLDataFactory, String) - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxEditorParser: Deprecated.
ManchesterOWLSyntaxEditorParser(OWLOntologyLoaderConfiguration, OWLDataFactory, String) - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxEditorParser: Deprecated.
ManchesterOWLSyntaxFrameRenderer - Class in uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer: Deprecated.
use org.semanticweb.owlapi.mansyntax.renderer.ManchesterOWLSyntaxFrameRenderer
ManchesterOWLSyntaxFrameRenderer(OWLOntology, Writer, ShortFormProvider) - Constructor for class uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxFrameRenderer: Deprecated.
ManchesterOWLSyntaxFrameRenderer(Set<OWLOntology>, Writer, ShortFormProvider) - Constructor for class uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxFrameRenderer: Deprecated.

Instantiates a new manchester owl syntax frame renderer.
ManchesterOWLSyntaxFramesParser - Class in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use ManchesterOWLSyntaxFramesParser
ManchesterOWLSyntaxFramesParser(OWLDataFactory, OWLEntityChecker) - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxFramesParser: Deprecated.
ManchesterOWLSyntaxInlineAxiomParser - Class in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use ManchesterOWLSyntaxInlineAxiomParser
ManchesterOWLSyntaxInlineAxiomParser(OWLDataFactory, OWLEntityChecker) - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxInlineAxiomParser: Deprecated.
ManchesterOWLSyntaxObjectRenderer - Class in uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer: Deprecated.
use org.semanticweb.owlapi.mansyntax.renderer.ManchesterOWLSyntaxObjectRenderer
ManchesterOWLSyntaxObjectRenderer(Writer, ShortFormProvider) - Constructor for class uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxObjectRenderer: Deprecated.
ManchesterOWLSyntaxOntologyFormat - Class in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use ManchesterSyntaxDocumentFormat
ManchesterOWLSyntaxOntologyFormat() - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxOntologyFormat: Deprecated.
ManchesterOWLSyntaxOntologyParser - Class in org.coode.owlapi.manchesterowlsyntax: Deprecated.
use ManchesterOWLSyntaxOntologyParser
ManchesterOWLSyntaxOntologyParser() - Constructor for class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxOntologyParser: Deprecated.
ManchesterOWLSyntaxRenderer - Class in uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer: Deprecated.
use org.semanticweb.owlapi.mansyntax.renderer.ManchesterOWLSyntaxRenderer
ManchesterOWLSyntaxRenderer() - Constructor for class uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxRenderer: Deprecated.
matches(String) - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
matches(String, String) - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.

for keywords which match two tokens.
matchesEitherForm(String) - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.

O

OBO12DocumentFormat - Class in org.coode.owlapi.obo12.parser: Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 10-Jan-2007
OBO12DocumentFormat() - Constructor for class org.coode.owlapi.obo12.parser.OBO12DocumentFormat
OBO12DocumentFormatFactory - Class in org.coode.owlapi.obo12.parser
OBO12DocumentFormatFactory() - Constructor for class org.coode.owlapi.obo12.parser.OBO12DocumentFormatFactory
OBO12ParserFactory - Class in org.coode.owlapi.obo12.parser: Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 10-Jan-2007
OBO12ParserFactory() - Constructor for class org.coode.owlapi.obo12.parser.OBO12ParserFactory
OBO_ID_PATTERN - Static variable in enum org.coode.owlapi.obo12.parser.OBOVocabulary: The pattern for OBO IDs.
OBO_IRI_BASE - Static variable in enum org.coode.owlapi.obo12.parser.OBOVocabulary
OBO_IRI_PATTERN - Static variable in enum org.coode.owlapi.obo12.parser.OBOVocabulary
OBOOntologyFormat - Class in org.coode.owlapi.obo.parser: Deprecated.
use OBODocumentFormat
OBOOntologyFormat() - Constructor for class org.coode.owlapi.obo.parser.OBOOntologyFormat: Deprecated.
OBOParserConstants - Interface in org.coode.owlapi.obo12.parser: Token literal values and constants.
OBOParserHandler - Interface in org.coode.owlapi.obo12.parser: Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 10-Jan-2007
OBOPrefix - Enum in org.coode.owlapi.obo12.parser: Author: Matthew Horridge
Stanford University
Bio-Medical Informatics Research Group
Date: 18/04/2012
OBOVocabulary - Enum in org.coode.owlapi.obo12.parser: Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 10-Jan-2007
ONTOLOGY_URI_BASE - Static variable in enum org.coode.owlapi.obo12.parser.OBOVocabulary: Deprecated.
Use OBOVocabulary.OBO_IRI_BASE
OPEN_SQUARE_BRACKET - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
org.coode.owl.krssparser - package org.coode.owl.krssparser
org.coode.owlapi.latex - package org.coode.owlapi.latex
org.coode.owlapi.manchesterowlsyntax - package org.coode.owlapi.manchesterowlsyntax
org.coode.owlapi.obo.parser - package org.coode.owlapi.obo.parser
org.coode.owlapi.obo12.parser - package org.coode.owlapi.obo12.parser
org.coode.owlapi.turtle - package org.coode.owlapi.turtle
org.obolibrary.owl - package org.obolibrary.owl
org.semanticweb.owlapi.expression - package org.semanticweb.owlapi.expression
org.semanticweb.owlapi.io - package org.semanticweb.owlapi.io
org.semanticweb.owlapi.model - package org.semanticweb.owlapi.model
org.semanticweb.owlapi.vocab - package org.semanticweb.owlapi.vocab
OWLFunctionalSyntaxOntologyFormat - Class in org.semanticweb.owlapi.io: Deprecated.
use FunctionalSyntaxDocumentFormat
OWLFunctionalSyntaxOntologyFormat() - Constructor for class org.semanticweb.owlapi.io.OWLFunctionalSyntaxOntologyFormat: Deprecated.
OWLOntologyFormat - Interface in org.semanticweb.owlapi.model: Deprecated.
this interface is here only to help with backwards compatibility
OWLXMLOntologyFormat - Class in org.semanticweb.owlapi.io: Deprecated.
use OWLXMLDocumentFormat
OWLXMLOntologyFormat() - Constructor for class org.semanticweb.owlapi.io.OWLXMLOntologyFormat: Deprecated.

P

parse(String) - Static method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
parseClassExpressionList(boolean) - Method in class org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxEditorParser: Deprecated.
use ManchesterOWLSyntaxParserImpl.parseClassExpressionList()
ParserException - Exception in org.semanticweb.owlapi.expression: Deprecated.
use org.semanticweb.owlapi.mansyntax.renderer.ParserException
ParserException(ParserException) - Constructor for exception org.semanticweb.owlapi.expression.ParserException: Deprecated.
PrefixOWLOntologyFormat - Interface in org.semanticweb.owlapi.vocab: Deprecated.
use PrefixDocumentFormat instead

Q

QUOTED_STRING - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
QUOTED_STRING_DBL_QUOTE_TERMINATOR - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
QUOTED_STRING_NEW_LINE_TERMINATOR - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
QUOTED_STRING_START - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.

R

RDFXMLOntologyFormat - Class in org.semanticweb.owlapi.io: Deprecated.
use RDFXMLDocumentFormat
RDFXMLOntologyFormat() - Constructor for class org.semanticweb.owlapi.io.RDFXMLOntologyFormat: Deprecated.

S

setIDSpaceManager(IDSpaceManager) - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormat
setIgnoreOntologyURI(boolean) - Method in class de.uulm.ecs.ai.owlapi.krssparser.KRSS2OntologyFormat: Deprecated.
STANZA_TYPE - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
startFrame(String) - Method in interface org.coode.owlapi.obo12.parser.OBOParserHandler
startHeader() - Method in interface org.coode.owlapi.obo12.parser.OBOParserHandler
STRING - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
SynonymScope - Enum in org.coode.owlapi.obo12.parser: Author: Matthew Horridge
Stanford University
Bio-Medical Informatics Research Group
Date: 18/04/2012

T

TAG_COLON - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
TAG_END - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
TAG_NAME - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
TAG_VALUE_WS - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: RegularExpression Id.
tokenImage - Static variable in interface org.coode.owlapi.obo12.parser.OBOParserConstants: Literal token values.
toString() - Method in class org.coode.owlapi.latex.LatexOntologyFormat: Deprecated.
toString() - Method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.
toString() - Method in class org.coode.owlapi.obo12.parser.OBO12DocumentFormat
toString() - Method in enum org.coode.owlapi.obo12.parser.OBOVocabulary
toString() - Method in class org.semanticweb.owlapi.io.OWLFunctionalSyntaxOntologyFormat: Deprecated.
toString() - Method in class org.semanticweb.owlapi.io.OWLXMLOntologyFormat: Deprecated.
TurtleOntologyFormat - Class in org.coode.owlapi.turtle: Deprecated.
use TurtleDocumentFormat
TurtleOntologyFormat() - Constructor for class org.coode.owlapi.turtle.TurtleOntologyFormat: Deprecated.

U

uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer - package uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer
uk.ac.manchester.cs.owlapi.dlsyntax - package uk.ac.manchester.cs.owlapi.dlsyntax

V

valueOf(String) - Static method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.

Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.coode.owlapi.obo12.parser.OBOPrefix: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.coode.owlapi.obo12.parser.SynonymScope: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax: Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.coode.owlapi.obo12.parser.OBOPrefix: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.coode.owlapi.obo12.parser.OBOVocabulary: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.coode.owlapi.obo12.parser.SynonymScope: Returns an array containing the constants of this enum type, in the order they are declared.

A C D E G H I K L M O P Q R S T U V