org.apache.mahout.clustering

Class AbstractCluster

java.lang.Object

org.apache.mahout.clustering.AbstractCluster

All Implemented Interfaces:

org.apache.hadoop.io.Writable, Cluster, Model<VectorWritable>, Parametered

Direct Known Subclasses:

DistanceMeasureCluster

public abstract class AbstractCluster
extends Object
implements Cluster

Nested Class Summary

Nested classes/interfaces inherited from interface org.apache.mahout.common.parameters.Parametered

Parametered.ParameteredGeneralizations

Field Summary

Fields inherited from interface org.apache.mahout.clustering.Cluster

CLUSTERS_DIR, FINAL_ITERATION_SUFFIX, INITIAL_CLUSTERS_DIR

Fields inherited from interface org.apache.mahout.common.parameters.Parametered

log

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	AbstractCluster()
protected	AbstractCluster(Vector point, int id2)
protected	AbstractCluster(Vector center2, Vector radius2, int id2)

Method Summary

Modifier and Type	Method and Description
String	asFormatString(String[] bindings) Produce a custom, human-friendly, printable representation of the Cluster.
Map<String,Object>	asJson(String[] bindings) Produce a JSON representation of the Cluster.
Vector	computeCentroid() Compute the centroid by averaging the pointTotals
void	computeParameters() Compute a new set of posterior parameters based upon the Observations that have been observed since my creation
void	configure(org.apache.hadoop.conf.Configuration job)
void	createParameters(String prefix, org.apache.hadoop.conf.Configuration jobConf) EXPERT: consumers should never have to call this method.
static String	formatVector(Vector v, String[] bindings) Return a human-readable formatted string representation of the vector, not intended to be complete nor usable as an input/output representation
static List<Object>	formatVectorAsJson(Vector v, String[] bindings) Create a List of HashMaps containing vector terms and weights
Vector	getCenter() Get the "center" of the Cluster as a Vector
int	getId() Get the id of the Cluster
abstract String	getIdentifier()
long	getNumObservations() Return the number of observations that this model has seen since its parameters were last computed
Collection<Parameter<?>>	getParameters()
Vector	getRadius() Get the "radius" of the Cluster as a Vector.
protected double	getS0()
protected Vector	getS1()
protected Vector	getS2()
long	getTotalObservations() Return the number of observations that this model has seen over its lifetime
boolean	isConverged()
void	observe(Model<VectorWritable> x) Observe the given model, retaining information about its observations
void	observe(Vector x)
void	observe(Vector x, double weight)
void	observe(VectorWritable x) Observe the given observation, retaining information about it
void	observe(VectorWritable x, double weight) Observe the given observation, retaining information about it
void	readFields(DataInput in)
protected void	setCenter(Vector center)
protected void	setId(int id)
protected void	setNumObservations(long l)
protected void	setRadius(Vector radius)
protected void	setS0(double s0)
protected void	setS1(Vector s1)
protected void	setS2(Vector s2)
protected void	setTotalObservations(long totalPoints)
void	write(DataOutput out)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.apache.mahout.clustering.Model

pdf, sampleFromPosterior

Constructor Detail

AbstractCluster

protected AbstractCluster()

AbstractCluster

protected AbstractCluster(Vector point,
                          int id2)

AbstractCluster

protected AbstractCluster(Vector center2,
                          Vector radius2,
                          int id2)

Method Detail

write

public void write(DataOutput out)
           throws IOException

Specified by:

write in interface org.apache.hadoop.io.Writable

Throws:

IOException

readFields

public void readFields(DataInput in)
                throws IOException

Specified by:

readFields in interface org.apache.hadoop.io.Writable

Throws:

IOException

configure

public void configure(org.apache.hadoop.conf.Configuration job)

Specified by:

configure in interface Parametered

getParameters

public Collection<Parameter<?>> getParameters()

Specified by:

getParameters in interface Parametered

createParameters

public void createParameters(String prefix,
                             org.apache.hadoop.conf.Configuration jobConf)

Description copied from interface: Parametered

EXPERT: consumers should never have to call this method. It would be friendly visible to Parametered.ParameteredGeneralizations if java supported it. Calling this method should create a new list of parameters and is called

Specified by:

createParameters in interface Parametered

Parameters:

prefix - ends with a dot if not empty.

jobConf - configuration used for retrieving values

See Also:

invoking method, invoking method

getId

public int getId()

Description copied from interface: Cluster

Get the id of the Cluster

Specified by:

getId in interface Cluster

Returns:

a unique integer

setId

protected void setId(int id)

Parameters:

id - the id to set

getNumObservations

public long getNumObservations()

Description copied from interface: Model

Return the number of observations that this model has seen since its parameters were last computed

Specified by:

getNumObservations in interface Model<VectorWritable>

Returns:

a long

setNumObservations

protected void setNumObservations(long l)

Parameters:

l - the numPoints to set

getTotalObservations

public long getTotalObservations()

Description copied from interface: Model

Return the number of observations that this model has seen over its lifetime

Specified by:

getTotalObservations in interface Model<VectorWritable>

Returns:

a long

setTotalObservations

protected void setTotalObservations(long totalPoints)

getCenter

public Vector getCenter()

Description copied from interface: Cluster

Get the "center" of the Cluster as a Vector

Specified by:

getCenter in interface Cluster

Returns:

a Vector

setCenter

protected void setCenter(Vector center)

Parameters:

center - the center to set

getRadius

public Vector getRadius()

Description copied from interface: Cluster

Get the "radius" of the Cluster as a Vector. Usually the radius is the standard deviation expressed as a Vector of size equal to the center. Some clusters may return zero values if not appropriate.

Specified by:

getRadius in interface Cluster

Returns:

aVector

setRadius

protected void setRadius(Vector radius)

Parameters:

radius - the radius to set

getS0

protected double getS0()

Returns:

the s0

setS0

protected void setS0(double s0)

getS1

protected Vector getS1()

Returns:

the s1

setS1

protected void setS1(Vector s1)

getS2

protected Vector getS2()

Returns:

the s2

setS2

protected void setS2(Vector s2)

observe

public void observe(Model<VectorWritable> x)

Description copied from interface: Model

Observe the given model, retaining information about its observations

Specified by:

observe in interface Model<VectorWritable>

Parameters:

x - a Model<0>

observe

public void observe(VectorWritable x)

Description copied from interface: Model

Observe the given observation, retaining information about it

Specified by:

observe in interface Model<VectorWritable>

Parameters:

x - an Observation from the posterior

observe

public void observe(VectorWritable x,
                    double weight)

Description copied from interface: Model

Observe the given observation, retaining information about it

Specified by:

observe in interface Model<VectorWritable>

Parameters:

x - an Observation from the posterior

weight - a double weighting factor

observe

public void observe(Vector x,
                    double weight)

observe

public void observe(Vector x)

computeParameters

public void computeParameters()

Description copied from interface: Model

Compute a new set of posterior parameters based upon the Observations that have been observed since my creation

Specified by:

computeParameters in interface Model<VectorWritable>

asFormatString

public String asFormatString(String[] bindings)

Description copied from interface: Cluster

Produce a custom, human-friendly, printable representation of the Cluster.

Specified by:

asFormatString in interface Cluster

Parameters:

bindings - an optional String[] containing labels used to format the primary Vector/s of this implementation.

Returns:

a String

asJson

public Map<String,Object> asJson(String[] bindings)

Description copied from interface: Cluster

Produce a JSON representation of the Cluster.

Specified by:

asJson in interface Cluster

Parameters:

bindings - an optional String[] containing labels used to format the primary Vector/s of this implementation.

Returns:

a Map

getIdentifier

public abstract String getIdentifier()

computeCentroid

public Vector computeCentroid()

Compute the centroid by averaging the pointTotals

Returns:

the new centroid

formatVector

public static String formatVector(Vector v,
                                  String[] bindings)

Return a human-readable formatted string representation of the vector, not intended to be complete nor usable as an input/output representation

formatVectorAsJson

public static List<Object> formatVectorAsJson(Vector v,
                                              String[] bindings)
                                       throws IOException

Create a List of HashMaps containing vector terms and weights

Returns:

List